CV884978

Overview
NameCV884978
Unique NameCV884978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length993
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: CSD_XYLFA (Probable cysteine desulfurase OS=Xylella fastidiosa GN=csd PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 8.294e-54
Identity = 109/251 (43.43%), Postives = 153/251 (60.96%), Query Frame = -1
Query:  232 DLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 984
            DLD L  +++ + KL+ I H+SN+L ++ PI +I   +   G   +VD  Q+ PH  +D+  +  DF   + HK+ GPTG G L+ + + L  MPPFLGGGEMI +V  D + F  PP +FEAGTP           +DY+  IG+++I   E EL  +L E L  I  +R++G  P+    +AA+ SF +E  H  D+ATLLD + GVA RSG HCA PL +Y GV A+ RASL FYNT E+++ FI AL
Sbjct:  163 DLDALHTLMTPQVKLLAITHVSNVLGTVNPIHDICRQARQRGITTVVDGSQAAPHRHIDIPAIGCDFYAITGHKLYGPTGTGALWARREHLHIMPPFLGGGEMIKEVSFDGTLFNTPPHKFEAGTPNIAGFIGLRAAVDYVRRIGIEQIETRETELLAHLTEELQKIDGMRLFGTAPN----KAAVVSFMIEGTHAHDLATLLDLE-GVAIRSGQHCAHPLLQYYGVTATCRASLAFYNTHEEIERFIAAL 408          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: SUFS_SALCH (Cysteine desulfurase OS=Salmonella choleraesuis GN=sufS PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.415e-53
Identity = 114/251 (45.42%), Postives = 152/251 (60.56%), Query Frame = -1
Query:  232 LDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH-STFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 981
            L+ L  +   +T+L+ I H+SN+L +  P+ +++  +   GAKVLVD  Q+V H VVDVQ LD DF V S HK+ GPTGIG L+ K  LL  MPP+ GGG MIS V L   +T+A  P RFEAGTP           IDY++++G+ KI  YE  L +Y  E L  +P+I +YGP      QR  + +FN+   H  D+ + LD  YG+A R+GHHCA PL  + GV A  RASL  YNT E+VD  +  L
Sbjct:  154 LETLAALFDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHVVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMISTVSLTQGTTWAKAPWRFEAGTPNTGGIIGLGAAIDYVTSLGLDKIGDYEQMLMRYALEQLAQVPDITLYGP-----AQRLGVIAFNLGKHHAYDVGSFLD-NYGIAVRTGHHCAMPLMAWYGVPAMCRASLAMYNTHEEVDRLVAGL 398          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: SUFS_SALTY (Cysteine desulfurase OS=Salmonella typhimurium GN=sufS PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.116e-53
Identity = 113/251 (45.02%), Postives = 151/251 (60.16%), Query Frame = -1
Query:  232 LDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH-STFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 981
            L+ L  +   +T+L+ I H+SN+L +  P+ +++  +   GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MPP+ GGG MIS V L   +T+A  P RFEAGTP           IDY++++G+ KI  YE  L +Y  E L  +P+I +YGP      QR  + +FN+   H  D+ + LD  YG+A R+GHHCA PL  + GV A  RASL  YNT E+VD  +  L
Sbjct:  154 LETLAALFDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMISTVSLTQGTTWAKAPWRFEAGTPNTGGIIGLGAAIDYVTSLGLDKIGDYEQMLMRYALEQLAQVPDITLYGP-----AQRLGVIAFNLGKHHAYDVGSFLD-NYGIAVRTGHHCAMPLMAWYGVPAMCRASLAMYNTHEEVDRLVAGL 398          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: SUFS_SALTI (Cysteine desulfurase OS=Salmonella typhi GN=sufS PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.116e-53
Identity = 113/251 (45.02%), Postives = 151/251 (60.16%), Query Frame = -1
Query:  232 LDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH-STFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 981
            L+ L  +   +T+L+ I H+SN+L +  P+ +++  +   GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MPP+ GGG MIS V L   +T+A  P RFEAGTP           IDY++++G+ KI  YE  L +Y  E L  +P+I +YGP      QR  + +FN+   H  D+ + LD  YG+A R+GHHCA PL  + GV A  RASL  YNT E+VD  +  L
Sbjct:  154 LETLAALFDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMISTVSLTQGTTWAKAPWRFEAGTPNTGGIIGLGAAIDYVTSLGLDKIGDYEQMLMRYALEQLAQVPDITLYGP-----AQRLGVIAFNLGKHHAYDVGSFLD-NYGIAVRTGHHCAMPLMAWYGVPAMCRASLAMYNTHEEVDRLVAGL 398          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: SUFS_SALNS (Cysteine desulfurase OS=Salmonella newport (strain SL254) GN=sufS PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.116e-53
Identity = 113/251 (45.02%), Postives = 151/251 (60.16%), Query Frame = -1
Query:  232 LDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH-STFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 981
            L+ L  +   +T+L+ I H+SN+L +  P+ +++  +   GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MPP+ GGG MIS V L   +T+A  P RFEAGTP           IDY++++G+ KI  YE  L +Y  E L  +P+I +YGP      QR  + +FN+   H  D+ + LD  YG+A R+GHHCA PL  + GV A  RASL  YNT E+VD  +  L
Sbjct:  154 LETLAALFDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMISTVSLTQGTTWAKAPWRFEAGTPNTGGIIGLGAAIDYVTSLGLDKIGDYEQMLMRYALEQLAQVPDITLYGP-----AQRLGVIAFNLGKHHAYDVGSFLD-NYGIAVRTGHHCAMPLMAWYGVPAMCRASLAMYNTHEEVDRLVAGL 398          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: SUFS_SALHS (Cysteine desulfurase OS=Salmonella heidelberg (strain SL476) GN=sufS PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.116e-53
Identity = 113/251 (45.02%), Postives = 151/251 (60.16%), Query Frame = -1
Query:  232 LDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH-STFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 981
            L+ L  +   +T+L+ I H+SN+L +  P+ +++  +   GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MPP+ GGG MIS V L   +T+A  P RFEAGTP           IDY++++G+ KI  YE  L +Y  E L  +P+I +YGP      QR  + +FN+   H  D+ + LD  YG+A R+GHHCA PL  + GV A  RASL  YNT E+VD  +  L
Sbjct:  154 LETLAALFDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMISTVSLTQGTTWAKAPWRFEAGTPNTGGIIGLGAAIDYVTSLGLDKIGDYEQMLMRYALEQLAQVPDITLYGP-----AQRLGVIAFNLGKHHAYDVGSFLD-NYGIAVRTGHHCAMPLMAWYGVPAMCRASLAMYNTHEEVDRLVAGL 398          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: SUFS_SALG2 (Cysteine desulfurase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=sufS PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.116e-53
Identity = 113/251 (45.02%), Postives = 151/251 (60.16%), Query Frame = -1
Query:  232 LDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH-STFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 981
            L+ L  +   +T+L+ I H+SN+L +  P+ +++  +   GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MPP+ GGG MIS V L   +T+A  P RFEAGTP           IDY++++G+ KI  YE  L +Y  E L  +P+I +YGP      QR  + +FN+   H  D+ + LD  YG+A R+GHHCA PL  + GV A  RASL  YNT E+VD  +  L
Sbjct:  154 LETLAALFDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMISTVSLTQGTTWAKAPWRFEAGTPNTGGIIGLGAAIDYVTSLGLDKIGDYEQMLMRYALEQLAQVPDITLYGP-----AQRLGVIAFNLGKHHAYDVGSFLD-NYGIAVRTGHHCAMPLMAWYGVPAMCRASLAMYNTHEEVDRLVAGL 398          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: SUFS_SALEP (Cysteine desulfurase OS=Salmonella enteritidis PT4 (strain P125109) GN=sufS PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.116e-53
Identity = 113/251 (45.02%), Postives = 151/251 (60.16%), Query Frame = -1
Query:  232 LDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH-STFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 981
            L+ L  +   +T+L+ I H+SN+L +  P+ +++  +   GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MPP+ GGG MIS V L   +T+A  P RFEAGTP           IDY++++G+ KI  YE  L +Y  E L  +P+I +YGP      QR  + +FN+   H  D+ + LD  YG+A R+GHHCA PL  + GV A  RASL  YNT E+VD  +  L
Sbjct:  154 LETLAALFDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMISTVSLTQGTTWAKAPWRFEAGTPNTGGIIGLGAAIDYVTSLGLDKIGDYEQMLMRYALEQLAQVPDITLYGP-----AQRLGVIAFNLGKHHAYDVGSFLD-NYGIAVRTGHHCAMPLMAWYGVPAMCRASLAMYNTHEEVDRLVAGL 398          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: SUFS_SALDC (Cysteine desulfurase OS=Salmonella dublin (strain CT_02021853) GN=sufS PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.116e-53
Identity = 113/251 (45.02%), Postives = 151/251 (60.16%), Query Frame = -1
Query:  232 LDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDH-STFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 981
            L+ L  +   +T+L+ I H+SN+L +  P+ +++  +   GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MPP+ GGG MIS V L   +T+A  P RFEAGTP           IDY++++G+ KI  YE  L +Y  E L  +P+I +YGP      QR  + +FN+   H  D+ + LD  YG+A R+GHHCA PL  + GV A  RASL  YNT E+VD  +  L
Sbjct:  154 LETLAALFDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMISTVSLTQGTTWAKAPWRFEAGTPNTGGIIGLGAAIDYVTSLGLDKIGDYEQMLMRYALEQLAQVPDITLYGP-----AQRLGVIAFNLGKHHAYDVGSFLD-NYGIAVRTGHHCAMPLMAWYGVPAMCRASLAMYNTHEEVDRLVAGL 398          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: SUFS_SALAR (Cysteine desulfurase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=sufS PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.116e-53
Identity = 114/251 (45.42%), Postives = 151/251 (60.16%), Query Frame = -1
Query:  232 LDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFL-DHSTFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHAL 981
            L+ L  +   +T+L+ I H+SN+L +  P+ E++  +   GAKVLVD  Q+V H  VDVQ LD DF V S HK+ GPTGIG L+ K  LL  MPP+ GGG MI+ V L   +T+A  P RFEAGTP           IDY++++G+ KI  YE  L  Y  E L  +P+IR+YGP      QR  + +FN+   H  D+ + LD  YG+A R+GHHCA PL  + GV A  RASL  YNT E+VD  +  L
Sbjct:  154 LEVLATLFDDRTRLLAITHVSNVLGTENPLPEMIAQARQHGAKVLVDGAQAVMHHAVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLAQGTTWAKAPWRFEAGTPNTGGIIGLGAAIDYVASLGLDKIGDYEQMLMHYALEQLAQVPDIRLYGP-----AQRLGVIAFNLGKHHAYDVGSFLD-NYGIAVRTGHHCAMPLMAWYGVPAMCRASLAMYNTYEEVDRLVAGL 398          
The following BLAST results are available for this feature:
BLAST of CV884978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
CSD_XYLFA8.294e-5443.43Probable cysteine desulfurase OS=Xylella fastidios... [more]
SUFS_SALCH1.415e-5345.42Cysteine desulfurase OS=Salmonella choleraesuis GN... [more]
SUFS_SALTY4.116e-5345.02Cysteine desulfurase OS=Salmonella typhimurium GN=... [more]
SUFS_SALTI4.116e-5345.02Cysteine desulfurase OS=Salmonella typhi GN=sufS P... [more]
SUFS_SALNS4.116e-5345.02Cysteine desulfurase OS=Salmonella newport (strain... [more]
SUFS_SALHS4.116e-5345.02Cysteine desulfurase OS=Salmonella heidelberg (str... [more]
SUFS_SALG24.116e-5345.02Cysteine desulfurase OS=Salmonella gallinarum (str... [more]
SUFS_SALEP4.116e-5345.02Cysteine desulfurase OS=Salmonella enteritidis PT4... [more]
SUFS_SALDC4.116e-5345.02Cysteine desulfurase OS=Salmonella dublin (strain ... [more]
SUFS_SALAR4.116e-5345.42Cysteine desulfurase OS=Salmonella arizonae (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011G03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884978 ID=CV884978; Name=CV884978; organism=Citrus sinensis; type=EST; length=993bp
CCCTTTTTTGGAACAAACTAAAATTAAAAAAGAACTCATAGATGTGGTAC
ATTATGTGTAGAAATGTTACAGATGTCGGCCATTATAATTCACATAAAAA
GAAAATATTTGCATCAAACATGTGTATAAATATGGTACATGTGGGTTGAA
CAGTTGATTAAAATAAATTAGAGTACAGAACAATAATAGGAAACCCTACT
TAAACACATTGAAAAAGCTAACAGTTTCATTGAGTGCGTGGATGAACTCA
TCAACATCTTCTTTAGTATTGTAGAAGTGAAGACTGGCACGGGCACTTGC
ATTGACTCCTAAATAACGATGGAGAGGCTGAGCACAATGATGACCCGATC
TGGTAGCGACGCCGTACTGTTGATCAAGAAGAGTTGCAATATCTGTAGGG
TGGATATTCTCCACGTTAAAAGAACAGAGCGCAGCACGCTGAACATGCTC
TGAAGGTTTGGGCCCATAAATGCGTATATTTGGGATGGACAGAAGATTTT
CGTATAAATATTTGGCCAGCTCCATCTCATAAGCATGAATCTTCTGCATT
CCAATTGTTGACAAATAATCAATTGCTGCTCCTAATCCAATGGCTTCACC
AATTGCTGGTGTTCCAGCTTCAAATCTAGATGGAGGATCTGCAAAAGTTG
AATGATCTAAAAAAACGTCTGAAATCATTTCTCCGCCACCTAAAAATGGA
GGCATGGCAGACAAGAGATCACTCTTACCAAATAAGAATCCAATGCCTGT
AGGCCCACACATCTTGTGAGAAGAGGCAACAAGAAAATCGGCATCAAGGC
CCTGGACATCAACCACCATGTGCGGAACACTTTGACAAGCATCTACAAGC
ACTTTCGCCCCAACATCATGTGACCAATGTACAATCTCTTCAATTGGAAG
AATAGAAGCAAGCATGTTAGAGATATGATGAATAACTACAAGTTTGGTTT
TCCTTGAAAGCATTTCCTTCAACTTGTCAAGATCAGGACTTTC
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