CV884978

Overview
NameCV884978
Unique NameCV884978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length993
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: CSD_PSEAE (Probable cysteine desulfurase OS=Pseudomonas aeruginosa GN=csd PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.571e-36
Identity = 89/255 (34.90%), Postives = 138/255 (54.12%), Query Frame = -1
Query:  220 DLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 984
            DL++ + ++  +T+L+ I  +SN+L +  P+ E++  + + GA  LVD  Q   H   D+ GL  DF   S HK+ GP GIG L+G+   L  +  +  GGEM+       ++F   P  FEAGTP           ID+L+T+   ++ A+E  L   L   LL+   + + G        +AAL SF V+ +H  D+A LL +Q G+A R+GHHCA PL + L V  + R SL  YN  +D++ F  AL+ ++
Sbjct:  150 DLEQARHIIGERTRLLAISQLSNVLGTWQPVVELIQLARERGAWTLVDGAQGSVHGRHDLPGLGCDFYAFSGHKLYGPDGIGVLWGRPQALEQLAHWQFGGEMVRHTGFHEASFHAAPLGFEAGTPAVSAAIGLGATIDWLATLDEAEVAAHEGALHARLLAGLLARDGVSLLGE------PQAALASFCVDGVHVADLAHLLGEQ-GIAVRAGHHCAMPLLQRLEVPGALRVSLGLYNDADDLERFFLALDRSL 397          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: CSD_PASMU (Probable cysteine desulfurase OS=Pasteurella multocida GN=csd PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.533e-34
Identity = 89/257 (34.63%), Postives = 139/257 (54.09%), Query Frame = -1
Query:  208 MLSRKTKLVVIHHISNMLASILPIEEIV----HWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIY-GPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFFN 963
            +L+  T LV ++ +SN+  +  P+  ++      SH   A VLVDA Q++ H+ +D+Q LDADF+  S+HK+ GP G+G L GK   L  + P L GG+M+  V   H  FA+ P R EAGTP           +++LS   +     + + LA+     L + P+ +++  P+PS      ++  F    I  +DIATLL +Q  +A R+G HCAQP    LG +++ R S   YN + DVD F  AL+  ++  +
Sbjct:  175 VLNTNTVLVALNMVSNVTGTEQPVANLIKLIRQHSH---ALVLVDAAQAISHLPIDLQRLDADFIAFSAHKLYGPNGLGVLSGKRHALEQLHPLLYGGKMVERVSAQHIRFAELPYRLEAGTPNIAGVIGFNAVLEWLSQWDLTAAEQHAIALAEQCKMRLKNYPHCQLFLSPQPS------SIVCFVFNGIATSDIATLLAEQ-NIALRAGEHCAQPYLARLGQHSTLRLSFAPYNQQADVDAFFSALDNALALLD 421          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: CSD_TREPA (Probable cysteine desulfurase OS=Treponema pallidum GN=csd PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.054e-32
Identity = 83/258 (32.17%), Postives = 127/258 (49.22%), Query Frame = -1
Query:  211 DLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNETVSFF 984
            D+ + ++ +   TK+V    + N   ++ P +E+   +H VGA V++D  Q++ H V +V  L  DF V S HKM    G+G L     LL +MPPFL GG M+  V    S F   P ++E G+            I+Y  ++    + A    L   L   L  +P +  Y  +  E   R  + +FNV+N+H  D A +L ++ GV  RSG HC++P   +L + +  RAS   YNT EDV+    AL+     F
Sbjct:  148 DIQEAQKKIRACTKIVSFSAVVNATGAVNPAQELTALAHQVGAVVVIDGAQAMVHGVPNVADLGCDFFVFSGHKMFSLFGVGVLCAPHTLLESMPPFLYGGGMVDFVTEQESVFKGAPHKYEGGSANTAAVVSLCAAIEYCESLESSAVRASVHALDAALLARLEELPFLETYHARARE---RLGIIAFNVKNVHSHDTAHILGEE-GVMVRSGDHCSKPFMTHLSIQSCCRASFCIYNTMEDVEALTRALHAVGRIF 401          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: CSD_BORBU (Probable cysteine desulfurase OS=Borrelia burgdorferi GN=csd PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.832e-32
Identity = 81/259 (31.27%), Postives = 139/259 (53.67%), Query Frame = -1
Query:  220 DKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTF----ADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQP--LHRYLGVNASARASLHFYNTKEDVDEFIHALNETV 978
            ++++++++ KTKL+ I  I+N L +I  +E I   +      + VDA Q  PH+ +DV+ +  DFLV S HKM  PTGIG L+  +++   +     GG  + ++F+++       +D P++FE+GTP           I Y+  I M  I  ++ +L +Y  + L  +  +       + +++R ++ SF V+NIH  DI T LD   G+ATR+G  C+        L  +   R S +FYNT+E++D FI  L + +
Sbjct:  164 EEIEKLITEKTKLISISGINNTLGTINDLESIGKIAKKYNICLFVDAAQMAPHIKIDVKKIGCDFLVFSGHKMLAPTGIGILYISNNMAEKLHSSKLGGNTVEEIFIENEKIKFKASDSPNKFESGTPNIAGIIGLEEAIKYIDNISMDFILEHDKQLIEYGVKKLQELDEVEFI---LNTNLKRNSIISFTVKNIHSHDIETYLDTM-GIATRAGRTCSYVAFFPENLNKDHLLRISFYFYNTQEEIDNFILGLKKVI 418          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: CSD_UREPA (Probable cysteine desulfurase OS=Ureaplasma parvum GN=csd PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.430e-29
Identity = 81/256 (31.64%), Postives = 127/256 (49.61%), Query Frame = -1
Query:  226 PDLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAKVLV--DACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDVDEFIHALNE 987
            P L    +++S KTK+V      N++ ++L    I+     +   VLV  DA QS+ H + DV+   +DF+V S+HK+ GPTGIG  + K+DL+  M P   GG M   + L+     D   +FE GTP           + +L  IG  KIH +E+++ KY  + L  IP I+ Y    +     ++  +F+   +   D A  L  +  +  RSG  CA+ ++  +    + RAS + YN   DVD  I A+ E
Sbjct:  142 PQLSDFLKVISPKTKVVSFASGGNLIGNVLDENLIIKNIKKIKPDVLVCVDATQSIQHRMFDVKKCKSDFMVFSAHKLLGPTGIGVAYIKNDLIKKMQPLKYGGGMNFSIDLNSYQLYDNYMKFEGGTPHVAGFYGFNAALKFLMDIGYNKIHEHELKITKYARDQLALIPEIKTYVQDAT-----SSTITFSYNGVFCQDFANYLGSK-NIIVRSGLSCAKIINNVIQTECAIRASFYIYNDFNDVDRLIKAIKE 391          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: Y1343_HAEIN (Putative csd-like protein HI1343 OS=Haemophilus influenzae GN=HI1343 PE=5 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.865e-21
Identity = 62/162 (38.27%), Postives = 89/162 (54.94%), Query Frame = -1
Query:  511 DLDKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHW----SHDVGAKVLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHSTFADPPSRFEAGTPXXXXXXXXXXXIDYLSTIGMQKIHAYEMELAK 984
            D + L   LS KTKLV ++ +SN+  +  PI+ ++      SH   A VLVDA Q++ H+ +D+Q LDADFL  S+HK+ GP G+G L GK   LS + P   GG+M+  V  +  TFA+ P R EAGTP           +D+L          + + LA+
Sbjct:   72 DENVLISTLSEKTKLVALNFVSNVTGTEQPIKRLIQLIRKHSH---ALVLVDAAQAISHIKIDLQDLDADFLAFSAHKIYGPNGLGVLTGKLTALSQLQPLFFGGKMVERVSNNRITFAELPYRLEAGTPNIAGVIGFNAVLDWLQKWDFTAAEQHAISLAE 230          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: CSD_MYCGE (Probable cysteine desulfurase OS=Mycoplasma genitalium GN=csd PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 74/248 (29.84%), Postives = 121/248 (48.79%), Query Frame = -1
Query:  253 DKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAK--VLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHS---TFADPPSRFEAGTPXXXXXXXXXXXIDYL-STIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 978
            D   +  +  TKL+VI   SN+  + +  E+I      +     ++VDA Q+VPH  +D+   + DFL  S+HK  GPTG+G  F KS+L S + PF  GG++     LD++    F + PS+FEAGT            + ++       ++  Y  +L    Y+ L   PNI +     + H Q   + +F  + I+  D+AT L+ +  +  R G  C   + ++    +  R SL  YNTKE++
Sbjct:  152 DAFLKACTPSTKLLVITATSNLFGNSIDYEKISKHLKKISPNSFIVVDAVQAVPHHKIDITSANIDFLTFSTHKFYGPTGLGIAFIKSELQSRLKPFKLGGDIFKS--LDNNFKIIFKEGPSKFEAGTLNIMAIYALNKQLKFMQKEFNFSEMVFYSKQLKNLAYQLLSQNPNIVL-----ANHDQDVPIFAFKHKYINSADLATFLNIK-KIIVRQGSIC---VGKFKNKESFLRVSLLHYNTKEEL 388          
BLAST of CV884978 vs. ExPASy Swiss-Prot
Match: CSD_MYCPN (Probable cysteine desulfurase OS=Mycoplasma pneumoniae GN=csd PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.999e-20
Identity = 73/246 (29.67%), Postives = 114/246 (46.34%), Query Frame = -1
Query:  253 DKLKEMLSRKTKLVVIHHISNMLASILPIEEIVHWSHDVGAK--VLVDACQSVPHMVVDVQGLDADFLVASSHKMCGPTGIGFLFGKSDLLSAMPPFLGGGEMISDVFLDHST-FADPPSRFEAGTPXXXXXXXXXXXIDYL-STIGMQKIHAYEMELAKYLYENLLSIPNIRIYGPKPSEHVQRAALCSFNVENIHPTDIATLLDQQYGVATRSGHHCAQPLHRYLGVNASARASLHFYNTKEDV 978
            D  K +++ KTK+V I   SN+  + +   +I  +   V  K  V VDA Q+V H  +D+     DFL  S+HK  GPTG+G  + K  L   + P   GG++ + +  D++  F   P +FEAGTP           + +        ++ AY  +L +  YE L S P I +     + H Q   + SF    +   D+AT L+    +  R G  C   + RY   +   R SL  YNT +++
Sbjct:  152 DTFKSLINPKTKVVAITATSNLFGNSIDFAQIADYLKQVNPKAFVAVDAVQTVQHKQIDIAKTQIDFLAFSTHKFYGPTGLGVAYIKKSLQPQLQPLKLGGDIFTQIDPDNTIHFKSTPLKFEAGTPNIMAIYALNKLLRFFKQKFNFAQMMAYGHQLKQQAYELLNSNPQIVL-----ANHDQDVPIFSFKHRQLATIDLATFLNIN-KIMVRQGSIC---VGRYRNKDYFVRVSLMHYNTVKEL 388          
The following BLAST results are available for this feature:
BLAST of CV884978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
CSD_PSEAE1.571e-3634.90Probable cysteine desulfurase OS=Pseudomonas aerug... [more]
CSD_PASMU9.533e-3434.63Probable cysteine desulfurase OS=Pasteurella multo... [more]
CSD_TREPA1.054e-3232.17Probable cysteine desulfurase OS=Treponema pallidu... [more]
CSD_BORBU6.832e-3231.27Probable cysteine desulfurase OS=Borrelia burgdorf... [more]
CSD_UREPA2.430e-2931.64Probable cysteine desulfurase OS=Ureaplasma parvum... [more]
Y1343_HAEIN1.865e-2138.27Putative csd-like protein HI1343 OS=Haemophilus in... [more]
CSD_MYCGE2.062e-2029.84Probable cysteine desulfurase OS=Mycoplasma genita... [more]
CSD_MYCPN5.999e-2029.67Probable cysteine desulfurase OS=Mycoplasma pneumo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011G03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884978 ID=CV884978; Name=CV884978; organism=Citrus sinensis; type=EST; length=993bp
CCCTTTTTTGGAACAAACTAAAATTAAAAAAGAACTCATAGATGTGGTAC
ATTATGTGTAGAAATGTTACAGATGTCGGCCATTATAATTCACATAAAAA
GAAAATATTTGCATCAAACATGTGTATAAATATGGTACATGTGGGTTGAA
CAGTTGATTAAAATAAATTAGAGTACAGAACAATAATAGGAAACCCTACT
TAAACACATTGAAAAAGCTAACAGTTTCATTGAGTGCGTGGATGAACTCA
TCAACATCTTCTTTAGTATTGTAGAAGTGAAGACTGGCACGGGCACTTGC
ATTGACTCCTAAATAACGATGGAGAGGCTGAGCACAATGATGACCCGATC
TGGTAGCGACGCCGTACTGTTGATCAAGAAGAGTTGCAATATCTGTAGGG
TGGATATTCTCCACGTTAAAAGAACAGAGCGCAGCACGCTGAACATGCTC
TGAAGGTTTGGGCCCATAAATGCGTATATTTGGGATGGACAGAAGATTTT
CGTATAAATATTTGGCCAGCTCCATCTCATAAGCATGAATCTTCTGCATT
CCAATTGTTGACAAATAATCAATTGCTGCTCCTAATCCAATGGCTTCACC
AATTGCTGGTGTTCCAGCTTCAAATCTAGATGGAGGATCTGCAAAAGTTG
AATGATCTAAAAAAACGTCTGAAATCATTTCTCCGCCACCTAAAAATGGA
GGCATGGCAGACAAGAGATCACTCTTACCAAATAAGAATCCAATGCCTGT
AGGCCCACACATCTTGTGAGAAGAGGCAACAAGAAAATCGGCATCAAGGC
CCTGGACATCAACCACCATGTGCGGAACACTTTGACAAGCATCTACAAGC
ACTTTCGCCCCAACATCATGTGACCAATGTACAATCTCTTCAATTGGAAG
AATAGAAGCAAGCATGTTAGAGATATGATGAATAACTACAAGTTTGGTTT
TCCTTGAAAGCATTTCCTTCAACTTGTCAAGATCAGGACTTTC
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