CV884976

Overview
NameCV884976
Unique NameCV884976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV884976 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.743e-18
Identity = 75/296 (25.34%), Postives = 139/296 (46.96%), Query Frame = 3 
Query:   51 SKIREEYPDR-----MMLTFSVFPSPK-VSDTVVEPYNATLSVHQLVENADECMVLDNEALY---DICFRTLKLTTPSFGDL----NHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP--TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEME----FTEAESNMNDLVSEYQQYQDAT 881
            SK+ E   DR     ++ TFS+FPS +  SD VV+PYN  L++ +L++ +D   V  N++L    +I F           DL    N LI+   + V+  LRFPG + S +  +  NLIP P L F     AP +   +Q++  L   ++  ++ + +                + +    +  +E+ + ++  Q + S  FV W+  +V        P      +    + N+TS+ ++F ++ +QF  + +RKA+L+ Y     +E E    F E+  ++  ++ EY+  ++ T
Sbjct:  178 SKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSLNRIENILFNNNSNIQHDDNDLFLGANKLIALVSASVSNPLRFPGYMYSSMESIVSNLIPTPDLKFLTSSIAPFS---TQKHNYLNEYDMLLELSNDRYKTNRVGGDTSYISMLNYLIGYNLDQREIRKGILKSQQRIS--FVPWVARSVLVVHGKKSPYLKNTNLEGIQVTNNTSMIDVFTKILKQFDLLIKRKAYLNRYYSSVEEENEVMEMFNESRESVKSIIDEYKACKEIT 468
The following BLAST results are available for this feature:
BLAST of CV884976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 421
Match NameE-valueIdentityDescription
TBG_CANAL4.743e-1825.34Tubulin gamma chain OS=Candida albicans GN=TUB4 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011G02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884976 ID=CV884976; Name=CV884976; organism=Citrus sinensis; type=EST; length=892bp
GTCACTCCCTGGGAGGTGGTACGGGGTCGGGAATGGGAACACTTCTCATT
TCAAAGATCAGGGAGGAGTATCCAGATCGAATGATGCTCACTTTCTCAGT
GTTTCCATCCCCGAAGGTGTCGGACACTGTTGTTGAACCATACAATGCAA
CACTCTCTGTTCACCAGCTGGTTGAAAATGCTGATGAATGTATGGTTTTG
GATAACGAGGCTCTCTATGATATCTGCTTCAGGACCCTCAAGCTCACCAC
TCCTAGCTTTGGAGACTTGAATCACCTTATTTCTGCCACCATGAGTGGTG
TGACCTGTTGCCTTCGTTTTCCGGGTCAGCTCAACTCAGATCTTCGGAAG
CTAGCTGTTAATTTGATCCCATTCCCTCGTCTGCATTTCTTCATGGTTGG
ATTCGCTCCCCTCACCTCTCGTGGATCACAGCAATACAGGGCTCTCACTG
TTCCTGAGCTCACTCAACAAATGTGGGATGCTAAGAACATGATGTGTGCT
GCTGATCCTCGACACGGTCGGTACTTGACTGCTTCTGCGATGTTCCGTGG
CAAGATGAGCACCAAGGAGGTTGACGAACAGATGATCAATGTGCAGAACA
AGAACTCATCATACTTTGTTGAGTGGATTCCCAACAATGTGAAGTCTACT
GTTTGTGACATCCCTCCGACTGGTCTCAAAATGGCATCCACCTTCATTGG
TAACTCCACCTCAATTCAGGAAATGTTCAGGAGGGTGAGTGAACAGTTCA
CTGCCATGTTCCGCAGAAAGGCTTTTCTGCATTGGTACACTGGAGAGGGT
ATGGATGAGATGGAGTTTACCGAGGCAGAGAGCAATATGAACGATCTGGT
TTCTGAGTACCAACAGTATCAAGATGCAACTGCAGAGGAGGA
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