CV884960

Overview
NameCV884960
Unique NameCV884960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.373e-74
Identity = 131/242 (54.13%), Postives = 168/242 (69.42%), Query Frame = 2
Query:  107 GSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLP----GQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G G   G    G G  GG +  ++S+E+FE LL +RND  C ARGFYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYC+  ++  G+           P     +Y+GRGPIQL++N NY   GEA+G DLLNNP+L+A+DPV+SFK+A+WFWMT Q PKPSCH+VI  +W PS+ D+ A R+PGYG+ TNIINGG+ECG G +  VANRIGF+  +
Sbjct:   67 GGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEI--GATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNYGPAGEAIGEDLLNNPELVASDPVVSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRY 306          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.728e-72
Identity = 136/257 (52.92%), Postives = 171/257 (66.54%), Query Frame = 2
Query:   86 GGSAQNCGSG-----AVCGE-----RDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G ++  CG G     A CG        T   + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  A R+PG+G+ TNI+NGGIECG G +S VA+RIGF+  +
Sbjct:   44 GSTSDYCGDGCQSQCAGCGGGGTPVTPTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRY 300          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.948e-72
Identity = 123/225 (54.67%), Postives = 161/225 (71.56%), Query Frame = 2
Query:  149 TDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F  FG +G++  +K+E+AAF AQT HETTGGWP AP G YAWGYC++ + +              PG+ YYGRGPIQLT N NY   G+A+  DL+NNPDLL+T+P +SFK+AIWFWMT Q  KPS H+VI   W PSA D +A R+PGYG+ TNIINGGIECG G ++ V +R+GF+  +
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRY 299          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.567e-72
Identity = 130/227 (57.27%), Postives = 159/227 (70.04%), Query Frame = 2
Query:  146 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    SD           PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  A R+PG+G+ TNIINGGIECG G +S VA+RIGF+  +
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRY 245          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 270.781 bits (691), Expect = 6.567e-72
Identity = 135/256 (52.73%), Postives = 169/256 (66.02%), Query Frame = 2
Query:   89 GSAQNCGSGAVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            GS   CG G  C  + +G G          + GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF  FG +G    RKRE+AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  A R+PG+G+ TNI+NGGIECG G +S VA+RIGF+  +
Sbjct:   44 GSTPYCGDG--CQSQCSGCGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRY 297          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 8.577e-72
Identity = 131/256 (51.17%), Postives = 171/256 (66.80%), Query Frame = 2
Query:   86 GGSAQNCGSGAV------CGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLP----GQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G ++  CG+G        CG   T   + GG  +  IIS  +F+ +L +RND+ C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGWP AP G Y+WGYC+ ++ ++G+           P     +YYGRGPIQ+T+N NY   G+A+G DLLNNPDL+A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  A R+PGYG  TNIINGG+ECG G +  VA+RIGF+  +
Sbjct:   43 GSTSDYCGAGCQSQCSGGCGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCF-KEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRY 297          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.120e-71
Identity = 136/257 (52.92%), Postives = 172/257 (66.93%), Query Frame = 2
Query:   86 GGSAQNCGSGAVCGERDTGHG----------TDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G ++  CG G  C  + +G G          +DG  +G I+ R++FE LL +RND  C ARGFYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT HETTGGWP AP G ++WGYC+ ++ +  SD           PG+ YYGRGPIQL++N NY   G A+GVDLL+NPDL+ATD  +SFK+A+WFWMT Q  KPS H+VI   W PS  D  A R PGYG+ TNI+NGG+ECG G +  VANRIGF+  +
Sbjct:   57 GTTSDFCGDG--CQSQCSGCGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRY 309          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.560e-71
Identity = 128/227 (56.39%), Postives = 158/227 (69.60%), Query Frame = 2
Query:  146 GTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFP FG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYC+ ++    +D           PG+ YYGRGPIQL+ N NY   G A+GVDLL NPDL+ATDP +SFK+A+WFWMTAQ PKPS H VI  +W PS  D  A R PG+G+ TNIINGG+ECG G +S VA+RIGF+  +
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRY 245          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.604e-70
Identity = 129/257 (50.19%), Postives = 169/257 (65.76%), Query Frame = 2
Query:   86 GGSAQNCGSGAV------CGERDTGHGTDGGELG--KIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSH--GSDXXXXXXXXXLPG--QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G ++  CGSG        CG       + GG  G   I+SR +F+ +L +RND  C A+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYC+  + +   GSD              +YYGRGPIQ+++N NY   G+A+G +LL+NPDL+A+D  +SFK+A WFWMT Q PKPSCH V+  +W P+ ND  A R+PGYG+ TNIINGG+ECG G +S VA+RIGF+  +
Sbjct:   45 GSTSAYCGSGCQSQCSGSCGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRY 301          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.051e-69
Identity = 120/220 (54.55%), Postives = 160/220 (72.73%), Query Frame = 2
Query:  164 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVA-NRIGFFTTF 820
            +G II+R MFE +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC + +++                 YYGRGPIQLT   NY   G+ALG+DL+NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS +D ++ RLPGYG+ TNIINGG ECGKG+++  A +R+G++  +
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDPP------------YYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRY 233          
The following BLAST results are available for this feature:
BLAST of CV884960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI9_ORYSJ5.373e-7454.13Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SECCE1.728e-7252.92Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIX_PEA2.948e-7254.67Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI2_HORVU6.567e-7257.2726 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU6.567e-7252.7326 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI3_ORYSJ8.577e-7251.17Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_ORYSJ1.120e-7152.92Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SECCE5.560e-7156.39Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI1_ORYSJ3.604e-7050.19Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI11_ORYSJ3.051e-6954.55Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011F05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884960 ID=CV884960; Name=CV884960; organism=Citrus sinensis; type=EST; length=821bp
GGATAATTGATATCATAACTCTTGCTTTCAAATGAGGCTCATTGGGTCCT
TACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGAGGTTCAGCACAG
AATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATACTGGCCACGGGAC
GGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACT
TGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGAGGCTTCTACACT
TATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTC
TGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAA
CTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAATAT
GCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGGGTCCGACTACTG
TTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTC
CAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTG
GGGGTGGACTTGTTGAACAATCCAGACCTTCTTGCCACTGATCCAGTACT
ATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGC
CATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATGAC
GTAAACGCCAGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAA
CGGTGGAATTGAATGTGGCAAAGGTTGGAATAGCTTTGTAGCTAACCGTA
TTGGGTTCTTTACCACTTTCT
back to top