CV884953

Overview
NameCV884953
Unique NameCV884953
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6837 contig Csv1_Contig6837:462..1071. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884953 vs. ExPASy Swiss-Prot
Match: VATE_DICDI (V-type proton ATPase subunit E OS=Dictyostelium discoideum GN=vatE PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 41/140 (29.29%), Postives = 80/140 (57.14%), Query Frame = -3 
Query:  186 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 605
            +++ + ++++ A K++  +S D + Y+ +LK LI Q  ++L E  + +  RK+D  L+E     A  +Y + +     ++ VD   +L            +C GGV++++ +G+I+C+NTLD+RL++ F +  P IR QL
Sbjct:   85 REECLRDVIKEAQKKLATISDDKDKYQTILKNLIYQGFVKLNENKIQVVGRKEDAGLLEKATTEAAAQYKKNVG-KSIDVSVDKERFLPQGPKSDYNGP-TCCGGVILSALEGRIICKNTLDSRLEICFDQLTPVIRTQL 222
[Close]
BLAST of CV884953 vs. ExPASy Swiss-Prot
Match: VATE_CANAL (V-type proton ATPase subunit E OS=Candida albicans GN=VMA4 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 40/140 (28.57%), Postives = 74/140 (52.86%), Query Frame = -3 
Query:  186 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 605
            +D+++  + + A  E+  +++D   YK +L GLI + +L L EP V ++ R+ D  + +  +  A + + +K +    EI +D   +L              +GG+VV +  GKI  +NTL+ RL ++  + LP IR +L
Sbjct:   87 KDEVLHEIFDEAEAELKKITKDKKQYKPVLVGLIEEGVLALMEPKVSIKVREQDVDVAKEAITEAAKNFEEKAK-FKVEISIDDKNFL----------AKDIAGGIVVVNGSGKIEVDNTLEERLKILSEEALPAIRLEL 215
The following BLAST results are available for this feature:
BLAST of CV884953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
VATE_DICDI1.390e-1329.29V-type proton ATPase subunit E OS=Dictyostelium di... [more]
VATE_CANAL1.301e-1128.57V-type proton ATPase subunit E OS=Candida albicans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011E12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884953 ID=CV884953; Name=CV884953; organism=Citrus sinensis; type=EST; length=610bp
ATCCAGAACAGATTCACTGATTTTCACAAATAAAGATATTCTGCAAACAT
TATAATTTAAAATATGCAAACAAACAGGAAATAATAAATTTTATGGTCAA
TAACTAAACTTAAAAACTTCGGACATGAATAATCAGAGGGTGACAAACAA
TTCAAATTAACTCATCATGCAGCAACCTGACTGACGAGCTGCTTCCGGAT
CTCAGGAAGTTTTTTACGGAACACAACATCCAACCGTGCATCAAGGGTAT
TCTCACATACTATCTTCCCATCTCGAGAAGCCACCACGACACCTCCTGAG
CAGGATGGACCATGGGCATTATGATGGCCAGGGCCAGGCGGAAGATAGAT
GTGATGATCCACAATTATCTCTGGTGGGTGAACCTGCAATTTCTGTGCAT
ATTCCTCTTTTGCTGACTCCAAAACAGACTCCACCAAATGATGGTCATCT
TTGCGGCATCTCAGTAACACAGCTGGCTCTTTCAGCCTGAGCAAACTCTG
AACAATAAGACCCTTCAAAAGCTTCTTATATGAATTGTGATCGCGACTCA
CATTCAAAACCTCCTTTGATGCTGCCTCCATCATATTACTGACCAAATCA
TCCTGAGCCT
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