CV884951

Overview
NameCV884951
Unique NameCV884951
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884951_ssr840 microsatellite CV884951_ssr840:840..854. BLAST: Citrus ESTs to Prunus persica proteins V1
CV884951_ssr898 microsatellite CV884951_ssr898:898..918. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1830 contig Csv1_Contig1830:83..1014. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884951 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.996e-11
Identity = 49/151 (32.45%), Postives = 71/151 (47.02%), Query Frame = -1 
Query:  339 HITC-------NQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVE-----------LGN------------LKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIP 701
            +ITC       N    V R+ L + NL+G + PE  KL HL+ L+L +N++ G+IP E           +GN            L  L +L L  N  SG IPP + +L  L  L L  N  TG +  +L  + +L  + +S N+  G IP
Sbjct:   76 NITCDCSFLPQNSSCHVIRIALKSQNLTGIVPPEFSKLRHLKVLDLSRNSLTGSIPKEWASMRLEDLSFMGNRLSGPFPKVLTRLTMLRNLSLEGNQFSGPIPPDIGQLVHLEKLHLPSNAFTGPLTEKLGLLKNLTDMRISDNNFTGPIP 226
[Close]
BLAST of CV884951 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.996e-11
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = -1 
Query:  333 NPC--TWFHITCNQDNRVTRLDLGNSNLSGRLVPELGKLEHLQYLELYKNNIQGTIPVELGNLKSLISLDLYNNNISGKIPPSLAKLKSLVFLRLNDNRLTGQIPRELVGISSLKVVDVSSNDLCGTIPTS 719
            +PC   W  + C+  N +T + +    + G L   L     +Q ++   N+I GTIP  L +  S+ +L L +N  +G IP +L+ L  L  L L  N L+G+IP     +S L  +D+SSN L G +P+S
Sbjct:   55 DPCGEKWQGVVCDSSN-ITEIRIPGMKVGGGLSDTLADFSSIQVMDFSSNHISGTIPQALPS--SIRNLSLSSNRFTGNIPFTLSFLSDLSELSLGSNLLSGEIPDYFQQLSKLTKLDLSSNILEGHLPSS 182
The following BLAST results are available for this feature:
BLAST of CV884951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
Y1765_ARATH5.996e-1132.45Probable LRR receptor-like serine/threonine-protei... [more]
SUB_ARATH5.996e-1133.59Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011E11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884951 ID=CV884951; Name=CV884951; organism=Citrus sinensis; type=EST; length=932bp
CTTGGCTAGTATTGTATTACATCAATAAAATTCTCATCTTGAAAGTTGAA
ACATTTTTATGAAGATCACAACGATGCTATTACAGATGCATTTAAGCAGT
ATAATACAATTTACATATATGATGGCTTCATTTCACCAATAACACTATGC
TTTTTAGGTAAAGACGCTTTCAATCTTCGCGGACACATCTATTCGAAACC
TGAGTAGAGCTTGAAGCAACAATCAATCGTTTATGAGCAGTTTGTGTCAT
AACTTGCAAGTCCCAGCAACTCTGGACCTTCTAATCGAGGGTTATTCTCA
AAGTTGTTGAGTGGGATGTGTTCAAATGGTCCGCTTGTAGGAATTGTTCC
ACACAGATCATTGCTTGAAACATCCACAACTTTGAGACTTGAAATTCCAA
CAAGTTCCCTGGGAATTTGTCCAGTTAGCCGATTATCGTTAAGCCGCAAA
AAAACAAGAGATTTCAATTTAGCCAAGGAAGGAGGGATTTTCCCCGAGAT
GTTGTTATTATACAAGTCCAAGCTGATGAGGCTCTTCAAGTTACCGAGCT
CGACAGGGATAGTTCCTTGGATGTTGTTTTTGTAAAGTTCCAGGTATTGC
AAATGCTCGAGCTTGCCCAGTTCAGGGACGAGACGGCCGGATAGATTTGA
ATTACCCAAATCCAGTCGGGTAACGCGGTTGTCCTGATTACAGGTTATGT
GAAACCAAGTGCAGGGATTGACGAGAGTTGGATCCCAGCTCTGAAGCACG
TTATCGGGATCTGATAGGCTTCTCCTGAGCGCGTACAGCGCGTCCCCCTC
CGAGTTTCCACTCACCACCGCCACCAAGCTGCTGCTCCCTATTATTATTA
TTATTAGGCTTACGCTGAACGTTATACACACACTCAACCACTGCGCTGCC
GCCGCCGCCGCCGCCGCCATGGNTCTCTCTCT
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