CV884945

Overview
NameCV884945
Unique NameCV884945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884945_ssr701 microsatellite CV884945_ssr701:701..712. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3378 contig Csv1_Contig3378:526..1440. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: IMK3_ARATH (Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.491e-11
Identity = 39/124 (31.45%), Postives = 64/124 (51.61%), Query Frame = -1
Query:  551 LAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLISEDRQREIID---PNCEGVQSESLDALLAVATQCVSSSPDDRPTMHRVV 913
            L++L+           AG  GY APE  +  +A  KTDVYS GV++LE+L+GK P++A     G+++  W+   + E+   E+ D    N      + +   L +A  CV ++P  RP   +V+
Sbjct:  633 LSRLMTAAAGSSVIATAGALGYRAPELSKLKKANTKTDVYSLGVIILELLTGKSPSEAL---NGVDLPQWVATAVKEEWTNEVFDLELLNDVNTMGDEILNTLKLALHCVDATPSTRPEAQQVM 753          
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: Y5332_ARATH (Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.865e-11
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = -1
Query:  539 GYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLISEDRQREIIDP---NCEGVQSESLDALLAVATQCVSSSPDDRPTMHRVVQILE 853
            GY APE   + + T+ +DVYSFG+L+ EVL+GK         +  N+V W+N ++ E+   E+ D     C  V+ E ++ +L V   C +  P+ RP M  VV+++E
Sbjct:  469 GYRAPEITDTRKGTQPSDVYSFGILIFEVLTGK--------SEVANLVRWVNSVVREEWTGEVFDEELLRCTQVEEEMVE-MLQVGMVCTARLPEKRPNMIEVVRMVE 567          
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: Y1124_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.865e-11
Identity = 37/107 (34.58%), Postives = 62/107 (57.94%), Query Frame = -1
Query:  536 GYLAPEY-MQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLISEDRQREIIDPNCEGVQSESLDALLAVATQCVSSSPDDRPTMHRVVQILES 853
            GY+APE   QS RA+EK DVYS+GV++LE+++G++P ++    + L +  ++  L+      +  D      +   L  ++ +   C S +P  RP+M  VVQ+LES
Sbjct:  769 GYIAPELAQQSLRASEKCDVYSYGVVLLELVTGRKPVESPSENQVLILRDYVRDLLETGSASDCFDRRLREFEENELIQVMKLGLLCTSENPLKRPSMAEVVQVLES 875          
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: CRK37_ARATH (Cysteine-rich receptor-like protein kinase 37 OS=Arabidopsis thaliana GN=CRK37 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.660e-11
Identity = 47/141 (33.33%), Postives = 74/141 (52.48%), Query Frame = -1
Query:  515 LAKLLE-DEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKR----PTDASFIEKGLNIVGWLNFLISEDRQREIIDPNCEGVQSESLD---ALLAVATQCVSSSPDDRPTMHRVVQILESEVMTPCP 913
            +A+L + DE    T+ V GT+GY+APEY   G+ + K+DVYSFGV++LE++SGK       +    E+ L    W  ++  E R  EIIDP      + S++    L+ +   CV      RP+++ ++  LE       P
Sbjct:  491 MARLFDMDETRGQTSRVVGTYGYMAPEYATYGQFSTKSDVYSFGVMLLEMISGKSNKKLEKEEEEEEEELPAFVWKRWI--EGRFAEIIDPLAAPSNNISINEVMKLIHIGLLCVQEDISKRPSINSILFWLERHATITMP 629          
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: CCR35_ARATH (Serine/threonine-protein kinase-like protein At3g51990 OS=Arabidopsis thaliana GN=At3g51990 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.660e-11
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = -1
Query:  551 DEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLISEDRQREIIDPNC-EGVQSESLDALLAVATQCVSSSPDDRPTMHRVV 895
            D++   +T  AGT GYL P+Y+ + R + KTDV+SFG+L+LE++SG++  D  +      IV W   +I   +   I DP     +     + L  VA +CV +  + RP M  VV
Sbjct:  213 DDQKVKSTPPAGTMGYLDPDYVTADRLSTKTDVFSFGILLLEIISGRKAIDVRYSPS--FIVDWAIPMIKRGKIGGIYDPRIGPPIDVSVRNHLGLVAAKCVRTCREKRPGMEEVV 326          
The following BLAST results are available for this feature:
BLAST of CV884945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
IMK3_ARATH4.491e-1131.45Probable leucine-rich repeat receptor-like protein... [more]
Y5332_ARATH5.865e-1135.19Probable inactive receptor kinase At5g53320 OS=Ara... [more]
Y1124_ARATH5.865e-1134.58Probable LRR receptor-like serine/threonine-protei... [more]
CRK37_ARATH7.660e-1133.33Cysteine-rich receptor-like protein kinase 37 OS=A... [more]
CCR35_ARATH7.660e-1135.34Serine/threonine-protein kinase-like protein At3g5... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011E08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884945 ID=CV884945; Name=CV884945; organism=Citrus sinensis; type=EST; length=913bp
ATTTTACAAAATGGCATAAATCAGACCATCTTTTTCAGAGGCCAAACTTT
TGAACTTATACAAATACATTTACAATTAATTAGAAAGAACAAATGCAAGA
GTGATTACAACTTTCAAGAAAAGAAAATGAAAAAAAAAATGAATAATTGA
GTCATACTGCAAGTGGAATTTCCAGATCACGTGGAGAGGAAAAAAACATC
TGCACCCACCCCATGCAGAATGAGGACACCAGAAGTAGGTAAATTAACCG
AGAATTCCATCAAGACTAATCAAATACTTGGAGAGGGGGTTCAAGCGGAT
AGCACGAAGCACTGCATCTTCATTTTTCATAAATCTGCACAAAGAATGAA
TAAATAAAATGGAGAAGCCGAACTGTTGCAGACTTTTAGTCACCTTTTCA
CTGCTGGCATCATCCAAAATATTCTACAAACTGCATTAACATGGATGCAA
ACTCAAATATGTCTTCATTGTCGCCGCAAAGTTTTCAATCTGAGTTGGAA
TCGTAAAAGTCACTTGGGCATGGGGTCATGACCTCAGATTCAAGAATCTG
GACCACTCTGTGCATGGTGGGTCGATCATCTGGGCTGGAAGATACACACT
GGGTGGCTACTGCAAGAAGGGCATCAAGACTTTCAGACTGAACCCCTTCA
CAATTTGGATCAATGATCTCTCGTTGCCTATCCTCCGATATTAGGAAATT
CAACCAACCAACAATATTGAGGCCTTTCTCAATAAAAGATGCATCAGTAG
GCCGCTTTCCACTTAAAACTTCAAGCACCAAGACCCCAAAGCTGTAAACA
TCAGTCTTTTCTGTAGCTCTACCACTTTGCATGTACTCTGGAGCCAAGTA
ACCAAATGTTCCTGCAACAATGGTTGTAATGTGAGATTCTTCATCTTCTA
AAAGTTTAGCAAG
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