CV884945

Overview
NameCV884945
Unique NameCV884945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884945_ssr701 microsatellite CV884945_ssr701:701..712. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3378 contig Csv1_Contig3378:526..1440. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.904e-18
Identity = 55/134 (41.04%), Postives = 82/134 (61.19%), Query Frame = -1
Query:  521 LAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKG--LNIVGWLNFLISEDRQREIIDPNCE-GVQSESLDALLAVATQCVSSSPDDRPTMHRVVQILESEVMTP 913
            LA+L E+E++HI+T VAGT GY+APEY   G  T K DVYSFGVLVLE+++G   T+++F+  G  + ++ + N  +      +++D      V  +  +A++ VA  C S+SP DRP M  VV +LE     P
Sbjct:  828 LARLDEEEKTHISTKVAGTIGYMAPEYALWGYLTFKADVYSFGVLVLEIVAG--ITNSNFMGAGDSVCLLEFANECVESGHLMQVVDERLRPEVDRKEAEAVIKVALVCSSASPTDRPLMSEVVAMLEGLYPVP 959          
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: WAKLI_ARATH (Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.954e-18
Identity = 49/140 (35.00%), Postives = 82/140 (58.57%), Query Frame = -1
Query:  476 EESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLISEDRQREIIDPNC-EGVQSESLDALLAVATQCVSSSPDDRPTMHRVVQILESEVMTPCPSDFYDSNSD*KLC 892
            +++H+TT+VAGTFGYL PEY Q+ + T+K+DVYSFGV+++E+++G++P      E+   +V   N  + ++R  +I+D    EG   E + A+  +A +C+S     RP M  V   LE    +P   + +    D + C
Sbjct:  574 DQTHLTTLVAGTFGYLDPEYFQTSQFTDKSDVYSFGVVLVELITGEKPFSVMRPEENRGLVSHFNEAMKQNRVLDIVDSRIKEGCTLEQVLAVAKLARRCLSLKGKKRPNMREVSVELERIRSSPEDLELHIEEEDEEEC 713          
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: PSKR1_ARATH (Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 6.470e-18
Identity = 47/126 (37.30%), Postives = 77/126 (61.11%), Query Frame = -1
Query:  539 LAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLISEDRQREIIDPNCEGVQSE-SLDALLAVATQCVSSSPDDRPTMHRVVQILE 913
            LA+L+   E+H++T + GT GY+ PEY Q+  AT K DVYSFGV++LE+L+ KRP D    +   +++ W+  +  E R  E+ DP     +++  +  +L +A  C+S +P  RPT  ++V  L+
Sbjct:  881 LARLMSPYETHVSTDLVGTLGYIPPEYGQASVATYKGDVYSFGVVLLELLTDKRPVDMCKPKGCRDLISWVVKMKHESRASEVFDPLIYSKENDKEMFRVLEIACLCLSENPKQRPTTQQLVSWLD 1006          
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.450e-18
Identity = 48/114 (42.11%), Postives = 72/114 (63.16%), Query Frame = -1
Query:  539 TTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLISEDRQREIIDPNCEG-VQSESLDALLAVATQCVSSSPDDRPTMHRVVQILE 877
            +T V GTFGY APEY  +G+ T+K+DVYSFGV++LE+L+G++P D +  +   ++V W    +SED+ ++ IDP        +++  L AVA  CV    D RP M  VV+ L+
Sbjct:  238 STRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCIDPKLNNDFPPKAVAKLAAVAALCVQYEADFRPNMTIVVKALQ 351          
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: CRK2_ARATH (Cysteine-rich receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=CRK2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.104e-17
Identity = 50/145 (34.48%), Postives = 85/145 (58.62%), Query Frame = -1
Query:  509 LAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIV--GWLNFLISEDRQREIIDPNCE-------GVQSESLDALLAVATQCVSSSPDDRPTMHRVVQILES-EVMTPCPSD 913
            LA+  +D++SHI+T +AGT GY+APEY+  G+ TE  DVYSFGVLVLE+++GK+ T +   +   +++   W +F   E    +I DPN +        +  + +  ++ +   C    P  RP M +++ +L++ E + P PS+
Sbjct:  471 LARSFQDDKSHISTAIAGTLGYMAPEYLAHGQLTEMVDVYSFGVLVLEIVTGKQNTKSKMSDYSDSLITEAWKHFQSGE--LEKIYDPNLDWKSQYDSHIIKKEIARVVQIGLLCTQEIPSLRPPMSKLLHMLKNKEEVLPLPSN 613          
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: HSL1_ARATH (Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.441e-17
Identity = 43/112 (38.39%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  539 TIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLISEDRQREIIDPNCEGVQSESLDALLAVATQCVSSSPDDRPTMHRVVQILE 874
            +++AG+ GY+APEY  + R  EK+D+YSFGV++LE+++ KRP D    EK  ++V W+   + +     +IDP  +    E +  +L V   C S  P +RP+M RVV++L+
Sbjct:  851 SVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILEIVTRKRPVDPELGEK--DLVKWVCSTLDQKGIEHVIDPKLDSCFKEEISKILNVGLLCTSPLPINRPSMRRVVKMLQ 960          
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: TMK1_ARATH (Probable receptor protein kinase TMK1 OS=Arabidopsis thaliana GN=TMK1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.882e-17
Identity = 53/140 (37.86%), Postives = 80/140 (57.14%), Query Frame = -1
Query:  509 LAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLN--FLISEDRQREIIDPNCEGVQSESLDALLAVAT---QCVSSSPDDRPTMHRVVQILESEVMTPCPSD 913
            L +L  + +  I T +AGTFGYLAPEY  +GR T K DVYSFGV+++E+++G++  D S  E+ +++V W    ++  E   ++ ID   + +  E+L ++  VA     C +  P  RP M   V IL S V    PSD
Sbjct:  738 LVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMELITGRKSLDESQPEESIHLVSWFKRMYINKEASFKKAIDTTID-LDEETLASVHTVAELAGHCCAREPYQRPDMGHAVNILSSLVELWKPSD 876          
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.459e-17
Identity = 54/145 (37.24%), Postives = 80/145 (55.17%), Query Frame = -1
Query:  473 EESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLN-FLISEDRQREIIDPNCEG-VQSESLDALLAVATQCVSSSPDDRPTMHRVVQI---LESEVMTPCPSDFYDSNSD*KLCG 892
            E+S+++T V GTFGY APEY+ +G    ++DVYSFGV++LE+L G++  D +   K  N+V W   +L S  +   I+D       + E    L ++A QC+S  P  RPTM +VV+    L+  V+ P   D        KL G
Sbjct:  226 EQSYVSTRVMGTFGYAAPEYVSTGHLNARSDVYSFGVVLLELLCGRQALDHNRPAKEQNLVDWARPYLTSRRKVLLIVDTRLNSQYKPEGAVRLASIAVQCLSFEPKSRPTMDQVVRALVQLQDSVVKPANVDPLKVKDTKKLVG 370          
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: Y2317_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.459e-17
Identity = 50/129 (38.76%), Postives = 76/129 (58.91%), Query Frame = -1
Query:  542 LAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWL-NFLISEDRQREIIDPNCEGVQSE----SLDALLAVATQCVSSSPDDRPTMHRVVQIL 913
            LAK+++   S   + VAG++GY+APEY  + + TEK D+YSFGV++LE+L+GK P     +E+G ++  W  N +       EI+DP    V+ +     +  +  +A  C  SSP DRPTM  VV +L
Sbjct:  973 LAKVIDMPLSKSVSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELLTGKAPVQP--LEQGGDLATWTRNHIRDHSLTSEILDPYLTKVEDDVILNHMITVTKIAVLCTKSSPSDRPTMREVVLML 1099          
BLAST of CV884945 vs. ExPASy Swiss-Prot
Match: WAKLC_ARATH (Wall-associated receptor kinase-like 3 OS=Arabidopsis thaliana GN=WAKL3 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.211e-17
Identity = 46/135 (34.07%), Postives = 82/135 (60.74%), Query Frame = -1
Query:  488 EESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLISEDRQREIIDPNCEGVQSESLDALLAVATQCVSSSPDDRPTMHRVVQILESEVMTPCPSDFYDSNSD 892
            +++H+TT+VAGTFGY+ PEY  S + T K+DVYSFGV+++E+++G++P      E+G+ +  +    + E+R  +IID   +  +S+ + A+  +A +C++   + RP M  V   LE    +P   D +  N +
Sbjct:  581 DQTHLTTLVAGTFGYMDPEYFLSSQYTHKSDVYSFGVVLVELITGEKPMSRVRSEEGIGLATYFLEAMKENRAVDIIDIRIKD-ESKQVMAVAKLARRCLNRKGNKRPNMREVSIKLERIRSSPKDLDVHTENEE 714          
The following BLAST results are available for this feature:
BLAST of CV884945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
RKF1_ARATH2.904e-1841.04Probable LRR receptor-like serine/threonine-protei... [more]
WAKLI_ARATH4.954e-1835.00Wall-associated receptor kinase-like 22 OS=Arabido... [more]
PSKR1_ARATH6.470e-1837.30Phytosulfokine receptor 1 OS=Arabidopsis thaliana ... [more]
Y2197_ARATH8.450e-1842.11Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
CRK2_ARATH1.104e-1734.48Cysteine-rich receptor-like protein kinase 2 OS=Ar... [more]
HSL1_ARATH1.441e-1738.39Receptor-like protein kinase HSL1 OS=Arabidopsis t... [more]
TMK1_ARATH1.882e-1737.86Probable receptor protein kinase TMK1 OS=Arabidops... [more]
Y3545_ARATH2.459e-1737.24Probable receptor-like protein kinase At3g55450 OS... [more]
Y2317_ARATH2.459e-1738.76Probable leucine-rich repeat receptor-like protein... [more]
WAKLC_ARATH3.211e-1734.07Wall-associated receptor kinase-like 3 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011E08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884945 ID=CV884945; Name=CV884945; organism=Citrus sinensis; type=EST; length=913bp
ATTTTACAAAATGGCATAAATCAGACCATCTTTTTCAGAGGCCAAACTTT
TGAACTTATACAAATACATTTACAATTAATTAGAAAGAACAAATGCAAGA
GTGATTACAACTTTCAAGAAAAGAAAATGAAAAAAAAAATGAATAATTGA
GTCATACTGCAAGTGGAATTTCCAGATCACGTGGAGAGGAAAAAAACATC
TGCACCCACCCCATGCAGAATGAGGACACCAGAAGTAGGTAAATTAACCG
AGAATTCCATCAAGACTAATCAAATACTTGGAGAGGGGGTTCAAGCGGAT
AGCACGAAGCACTGCATCTTCATTTTTCATAAATCTGCACAAAGAATGAA
TAAATAAAATGGAGAAGCCGAACTGTTGCAGACTTTTAGTCACCTTTTCA
CTGCTGGCATCATCCAAAATATTCTACAAACTGCATTAACATGGATGCAA
ACTCAAATATGTCTTCATTGTCGCCGCAAAGTTTTCAATCTGAGTTGGAA
TCGTAAAAGTCACTTGGGCATGGGGTCATGACCTCAGATTCAAGAATCTG
GACCACTCTGTGCATGGTGGGTCGATCATCTGGGCTGGAAGATACACACT
GGGTGGCTACTGCAAGAAGGGCATCAAGACTTTCAGACTGAACCCCTTCA
CAATTTGGATCAATGATCTCTCGTTGCCTATCCTCCGATATTAGGAAATT
CAACCAACCAACAATATTGAGGCCTTTCTCAATAAAAGATGCATCAGTAG
GCCGCTTTCCACTTAAAACTTCAAGCACCAAGACCCCAAAGCTGTAAACA
TCAGTCTTTTCTGTAGCTCTACCACTTTGCATGTACTCTGGAGCCAAGTA
ACCAAATGTTCCTGCAACAATGGTTGTAATGTGAGATTCTTCATCTTCTA
AAAGTTTAGCAAG
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