CV884941

Overview
NameCV884941
Unique NameCV884941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length966
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:590..1555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884941 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 4.500e-41
Identity = 96/195 (49.23%), Postives = 119/195 (61.03%), Query Frame = -2
Query:  450 ELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG------RVGGVVTNWALVSMNHDTQSCMDPNVMEAK---------------VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 965
            EL I Y+++ +YVV+KHAALF ST++SK+L  PNVKLFNA   EDL+ +         V GVVTNW LV+  H TQ CMDPNV+E                 V++S+ GHDGPFGA   KR+  I   +++ GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  128 ELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of CV884941 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.706e-28
Identity = 74/176 (42.05%), Postives = 100/176 (56.82%), Query Frame = -2
Query:  438 ELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 965
            E G+DY +  N + +  +    ST+ SK + +   K+FN V  EDL+VK GRV G+V NW  V M   T   +DP  +EAK VV S GH    GA   + L   G+I+ +PG   +     E+  V  TREV PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:   84 EFGVDYSQVGNGLYVLDSIELASTLASKAV-KAGAKIFNMVEVEDLVVKDGRVSGLVINWTPVMM---TGLHVDPLTVEAKFVVDSTGH----GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
BLAST of CV884941 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 5.706e-28
Identity = 74/174 (42.53%), Postives = 98/174 (56.32%), Query Frame = -2
Query:  444 ELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 965
            E GI Y+E +    +  A    +TI SK++ +  VK+FN +  EDL++K  RV G+V NW  V M       +DP  +EAK V+ S GH        VKR    G+++E+PG  A+     E   V+ TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:   85 EFGIRYEEFEKGYYVADAIEVATTIASKVV-KSGVKIFNMIEVEDLVIKDNRVSGIVINWTPVLM---AGLHVDPLTIEAKYVIDSTGHGAQVAQFLVKR----GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CV884941 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.168e-27
Identity = 75/175 (42.86%), Postives = 98/175 (56.00%), Query Frame = -2
Query:  441 ELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 965
            E  I Y+E +    +  A    +TI SK + +  VK+FN V  EDL+VK  RV G+V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+IE++PG  A+     E   V  T+EV PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:   85 EFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMVEVEDLVVKDDRVSGIVINWTPVKM---TGLHVDPLTVEAKYVIDSTGH----GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CV884941 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.239e-27
Identity = 75/174 (43.10%), Postives = 96/174 (55.17%), Query Frame = -2
Query:  444 ELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 965
            E  I Y+E +    +  A    +TI SK + +  VK+FN +  EDL+VK  RV G+V NW  V M   T   +DP  +EAK V+ S GH    GA   + L   G+IE +PG  A+     E   V  TREV PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:   85 EFDIRYEEFEKGYYVADAIEVATTIASKTV-KAGVKIFNMIEVEDLVVKDNRVSGIVINWTPVLM---TGLHVDPLTVEAKYVIDSTGH----GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CV884941 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.743e-22
Identity = 62/154 (40.26%), Postives = 91/154 (59.09%), Query Frame = -2
Query:  441 IMSKLLARP---NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLG 893
            + +KL AR      ++ N    +D+IV+  RV GVV NW+ V       +C+DP  + A+ VV + GHD    A   ++L   GM+E    +  + +  +ED +V  T EV PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  109 LAAKLAARALEAGAEVLNLTMLDDVIVENSRVAGVVVNWSPVQGLPRQITCVDPVGLRAEYVVDATGHD----AVVTRKLAERGMVE-ASKLGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CV884941 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.258e-19
Identity = 69/204 (33.82%), Postives = 102/204 (50.00%), Query Frame = -2
Query:  438 ELGIDYDEQDN----YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD----------GPFGATGVKRLK--SIGMIE-----------EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 965
            EL + Y+E D     YV     A+ +S I S   A   V+  N     D++ +   RVGG+V NW  V       +C+DP  +E+ +VV S GHD          G   A G++     + GM             + PG  ++ ++ +ED +V  T  V PG++ TGM VA ++G PRMGPTFGAM++SG++ A   L  LG+
Sbjct:   92 ELDVPYEESDEASGLYVADGPHAV-SSLIKSACDAGAEVQ--NMTEFTDVVTRENHRVGGIVLNWTPVHALPRELTCVDPVAVESDLVVDSTGHDAVVISKLSERGVLNAPGIEHANEHNTGMDNTADDEYGAPGHDSPGHDSMWVSRSEDQVVEHTGVVHPGVVATGMAVATVEGLPRMGPTFGAMLLSGKRGAQACLNELGR 292          
BLAST of CV884941 vs. ExPASy Swiss-Prot
Match: THI4_THEMA (Putative thiazole biosynthetic enzyme OS=Thermotoga maritima GN=TM_0787 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.840e-18
Identity = 62/178 (34.83%), Postives = 98/178 (55.06%), Query Frame = -2
Query:  444 ELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWA-LVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIE---EVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 965
            E+ I+Y+ +++++V+  +  F S ++ +   +    +FN V+ ED+ V+ GRV GVV NW   V +       +DP  ++A  VV   GH     A  V  L   G++E   E P    +D + AE  +V  T E+ PG++V+GM V  + G PRMGP FG M++SGQK A +  + L
Sbjct:   86 EVEIEYEVKEDHIVVD-SVHFASGLLYRA-TKAGAIVFNNVSVEDVAVQNGRVCGVVVNWGPTVRLGLH----VDPITVKASFVVDGTGHP----ANVVSLLAKRGLVEMKTEFP----MDADEAEKFVVDNTGEIFPGLLVSGMAVCAVHGGPRMGPIFGGMILSGQKVARIVSERL 249          
BLAST of CV884941 vs. ExPASy Swiss-Prot
Match: THI4_METTP (Putative thiazole biosynthetic enzyme OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1121 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 4.098e-18
Identity = 56/147 (38.10%), Postives = 79/147 (53.74%), Query Frame = -2
Query:  438 KLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSI-----GMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQ 860
            +L N V+ ED++++ G R+ G+V NW    M       +DP  + A+VV+   GHD        K++        G+I E P   AL     E  +V  TREV PG+IV GM    +   PRMGP FG M++SG+KAA +AL+ L Q
Sbjct:  120 ELINLVSVEDVMIREGDRIVGLVINWTAADM---AGIHVDPLAIRARVVIDGTGHDAAVCRVVQKKIPGAIVGESGVIGEKPMWAAL----GEKIVVDATREVYPGLIVAGMAATTVAAGPRMGPIFGGMLLSGEKAASIALEKLAQ 259          
BLAST of CV884941 vs. ExPASy Swiss-Prot
Match: THI4_SULAC (Putative thiazole biosynthetic enzyme OS=Sulfolobus acidocaldarius GN=Saci_0854 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.130e-18
Identity = 56/176 (31.82%), Postives = 90/176 (51.14%), Query Frame = -2
Query:  444 ELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 965
            E+ I  ++ ++ V I  +A F + + +  +     K+ + V  +D+I +    RV GV   W    M       +DP  + AK VV + GHD    A   +++  +G++  +PG ++     AE   V  T  V PG+ V GM V E+ G PRMGP FG+M++SG+K A   +K L
Sbjct:   93 EMNIRLEKVEDGVYIVDSAEFMAKLAASAIDA-GAKIIHGVTVDDVIFRENPLRVAGVAVEWTATQM---AGLHVDPVFISAKAVVDATGHDAEVVAVASRKIPELGIV--IPGERSAYSEMAEKLTVEQTGVVAPGLYVAGMSVTEVRGLPRMGPIFGSMVLSGKKVAEDIIKDL 262          
The following BLAST results are available for this feature:
BLAST of CV884941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
THI4_YEAST4.500e-4149.23Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRKO5.706e-2842.05Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRHO5.706e-2842.53Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU2.168e-2742.86Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB8.239e-2743.10Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_AERPE2.743e-2240.26Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_HALWD8.258e-1933.82Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_THEMA1.840e-1834.83Putative thiazole biosynthetic enzyme OS=Thermotog... [more]
THI4_METTP4.098e-1838.10Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_SULAC9.130e-1831.82Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011E06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884941 ID=CV884941; Name=CV884941; organism=Citrus sinensis; type=EST; length=966bp
ATCAGCACTTTCCCATTGGCTGATGCCTCAAGTTATAAACATACAAAGCA
AAGAAAAGGGAACAGCCCAAGGGCAGTCTTACACATAACACAGATAACAA
GGACTAGATACGCAACTGCAAATTCACCTCCGAAAAACTCACAACGGTTT
CTTACAAGAGGAGAAAGAAATTAAAATTAAAGGTTCCATGATGGACCGGA
AACAAACACTTTATTCACAAAACCTCACAACATTATCTCATTATTCGCAT
CAACCATCCATCACAACCACCTAAATACAACTACTTTTTTGCCAGAGTTT
ATTTGCATGCACACAGCTGATGAGTGATGATGCCTGTTATTACCAAATTA
AGCATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAAGATCAGCTCAGGGT
GAACGCCTCCCACATATGTACCGTCTAATGCATTCGGCTGGCCCAGTGAC
TTCAACGCCAAATGCGCAGCCTTCTGCCCCGATATCATCATTGCTCCAAA
TGTTGGCCCCATTCGAGGAGCACCATCAATCTCGGCAACTTCCATGCCGG
TAACTATCATACCAGGCACAACCTCCCTGGTCAGCCTCACAATAGCATCT
TCTGCAGAGTTCATGTCCAGTGCCTTCATTCCAGGCACTTCCTCAATCAT
TCCGATACTCTTCAACCTCTTTACTCCAGTGGCCCCAAAAGGCCCATCAT
GGCCACAAGAGCTCACAACCACCTTCGCTTCCATTACATTGGGATCCATG
CAAGACTGTGTATCGTGATTCATTGACACCAACGCCCAGTTGGTCACCAC
ACCACCAACTCTGCCGCCTTTGACTATCAAGTCCTCGGCTGCCACTGCAT
TAAAGAGCTTGACGTTGGGGCGGGCCAGGAGCTTGCTCATTATAGTGGAG
GTGAACAGCGCTGCATGCTTGATCACAACATAGTTGTCTTGCTCATCGTA
GTCGATGCCAAGCTCG
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