CV884940

Overview
NameCV884940
Unique NameCV884940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884940 vs. ExPASy Swiss-Prot
Match: THI4_FERNB (Putative thiazole biosynthetic enzyme OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=Fnod_1422 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.371e-14
Identity = 44/144 (30.56%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  273 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNW 704
            +K+  +S+ + + Y   +    + D    G G + L+ A EL+KN   ++AI E    PGGG W GG +F+ +V+      +L E  I Y ++D ++V+   A+  ++ M     +    +FN V  EDL++   R+ GVV NW
Sbjct:    3 MKDLKISQLIVKHYFQKLNDVLNVDVAIAGCGPSALALATELAKNGR-KVAIFEAKNEPGGGIWGGGMMFNELVLESELEWYLKEHHIKYKKEDEFIVVD--AVHFASAMLYNATKNGAYIFNNVFVEDLVMYNERISGVVINW 143          
BLAST of CV884940 vs. ExPASy Swiss-Prot
Match: THI4_HALSA (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarium GN=VNG_2604G PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 48/153 (31.37%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  264 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI--DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALV 713
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WLGG L + + VR PA   LD+LG+  +YDE+++ + +  A    S +++        ++ N     D++V+    V G V NW  V
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMIT-AACDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPV 156          
BLAST of CV884940 vs. ExPASy Swiss-Prot
Match: THI4_HALS3 (Putative thiazole biosynthetic enzyme OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE4651F PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.044e-14
Identity = 48/153 (31.37%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  264 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI--DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALV 713
            F    E+ V+R +TR++  + +   +TD    G G +GL  A EL+   ++ + IIE++   GGG WLGG L + + VR PA   LD+LG+  +YDE+++ + +  A    S +++        ++ N     D++V+    V G V NW  V
Sbjct:    6 FADANEAEVTRAITRQWTDEFLDDTETDVIIVGGGPSGLMAAKELADR-DVDVTIIEKNNYLGGGFWLGGFLMNKLTVRSPAEAVLDDLGVPYEYDEENDGLAVADAPHACSAMIT-AACDAGARIQNMTEFTDIVVRDDHAVAGAVVNWTPV 156          
BLAST of CV884940 vs. ExPASy Swiss-Prot
Match: THI4_METMA (Putative thiazole biosynthetic enzyme OS=Methanosarcina mazei GN=MM_0222 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 49/152 (32.24%), Postives = 79/152 (51.97%), Query Frame = 3
Query:  273 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLA---RPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVS 716
            + E I++R +   Y    + Y D D    G G A L  A  L++    ++AI EQ +S GGG W GG +F  +VV++ A   LD+ GI Y E +    + ++       + KL+A       ++FN V+ ED++++   RV G+V NW  V+
Sbjct:    3 LDEVIITRAIFEEYSKTFLEYTDIDVALVGGGPANLVAAKYLAE-AGAKVAIYEQKLSLGGGMWAGGMMFPRIVVQEEACRVLDDFGIRYKEYEPGYFVANSV----ESVGKLIAGATSAGAEVFNLVSFEDIMIRENDRVTGIVINWGPVT 149          
BLAST of CV884940 vs. ExPASy Swiss-Prot
Match: THI4_METBF (Putative thiazole biosynthetic enzyme OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A2100 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.008e-14
Identity = 50/151 (33.11%), Postives = 76/151 (50.33%), Query Frame = 3
Query:  273 IKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSM 719
            + E I++R +   Y    + Y + D    G G A L  A  L++    ++AI EQ +S GGG W GG +F  +VV++ A   LD+ GI Y E Q  Y V          I     A    ++FN V+ ED++++   RV G+V NW  V++
Sbjct:    3 LDEVIITRAIFDEYSKTFLDYTEVDVALIGGGPANLVAARYLAE-AGAKVAIYEQKLSLGGGMWAGGMMFPRIVVQEEACRILDDFGIRYKEYQPGYYVANSVESVGKLISGATSA--GAEVFNLVSFEDVMIRENDRVTGIVVNWGPVTV 150          
BLAST of CV884940 vs. ExPASy Swiss-Prot
Match: THI4_HALMA (Putative thiazole biosynthetic enzyme OS=Haloarcula marismortui GN=rrnAC1782 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 48/156 (30.77%), Postives = 82/156 (52.56%), Query Frame = 3
Query:  261 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY----DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV 713
            +F  + E+ V+R + + +  + + ++D+D    G G +GL  A EL++   +Q+ ++E++   GGG WLGG L + + VR PA   LDEL +D+    D +  YV     A    + + K       K+ N     D++++   RVGG+V NW  V
Sbjct:    9 QFSDVGEAEVTRAIGQEWTEEFMDFSDSDVIIVGGGPSGLMAAKELAER-GVQVMVVEKNNYLGGGFWLGGFLMNKVTVRDPAQQVLDELEVDHKRSKDSEGLYVANGPEA---CSGLIKAACDAGAKMQNMTEFTDIVIREDHRVGGIVMNWTPV 160          
BLAST of CV884940 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.537e-13
Identity = 44/150 (29.33%), Postives = 77/150 (51.33%), Query Frame = 3
Query:  264 FDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV 713
            F  + E+ V+  +   + + +  +  +D    GAG AGL+ A+ L++    ++ I+EQ+   GGG WLGG   + + +R PA   LDEL + Y+     +      L  + + ++ L     ++ N    +D+IV+  RV GVV NW+ V
Sbjct:    3 FARVNEADVTEAILDGFYSSLKKHLRSDVIVVGAGPAGLTAAWRLAE-AGARVLIVEQNNYLGGGLWLGGYFMNPVTIRAPAQRILDELEVPYEAVKPGLYRTKGPLLAAKLAARAL-EAGAEVLNLTMLDDVIVENSRVAGVVVNWSPV 150          
BLAST of CV884940 vs. ExPASy Swiss-Prot
Match: THI4_HALWD (Putative thiazole biosynthetic enzyme OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ1276A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.007e-13
Identity = 53/156 (33.97%), Postives = 81/156 (51.92%), Query Frame = 3
Query:  261 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDN----YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV 713
            +F  + E+ V+R + + +  + I   DT+    G G +GL  A EL++   + + I+E++   GGG WLGG L + + VR PA   LDEL + Y+E D     YV     A+ +S I S   A   V+  N     D++ +   RVGG+V NW  V
Sbjct:    5 EFADVSEAQVTRAIAKDWGNEFIDRVDTEVIIVGGGPSGLVTAKELAER-GVDVTIVEKNNYLGGGFWLGGFLMNKVTVRDPAQSVLDELDVPYEESDEASGLYVADGPHAV-SSLIKSACDAGAEVQ--NMTEFTDVVTRENHRVGGIVLNWTPV 156          
BLAST of CV884940 vs. ExPASy Swiss-Prot
Match: THI4_ARCFU (Putative thiazole biosynthetic enzyme OS=Archaeoglobus fulgidus GN=AF_0702 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.621e-13
Identity = 48/159 (30.19%), Postives = 84/159 (52.83%), Query Frame = 3
Query:  261 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLIVKGGRVG--GVVTNWALVSMN 722
            KF  + E+ +++ +      + + YA++D    GAG +GL+ A  L++   ++  ++E+ +S GGG   GG LF  +VV + A   LD+ GI Y E  N++V   A       M+KL A+      K+ + V+ ED+I +   +G  GV   W+ V ++
Sbjct:    4 KFTEVMEAEITKAIVETASEEWVEYAESDVIVVGAGPSGLTAARYLAEK-GLKTLVLERRLSFGGGIGGGGMLFHKVVVEREAKDILDDFGIRYTEHRNFLVADSA-----EFMAKLAAKAIDAGAKIIHGVSVEDVIFRDDPLGVRGVCIQWSAVEIS 156          
BLAST of CV884940 vs. ExPASy Swiss-Prot
Match: THI4_NATPD (Putative thiazole biosynthetic enzyme OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=NP5174A PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.839e-13
Identity = 45/153 (29.41%), Postives = 80/153 (52.29%), Query Frame = 3
Query:  261 KFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD-EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV 713
            +F  + E+ V+R + + +  + + ++D+D    G G +GL  A ELS+   +Q  ++E++   GGG WLGG L + + VR PA   L++L +D+   QD+  +         + + K       K+ N     D++++   RVGG+V NW  V
Sbjct:    6 QFSDVGEAEVTRAIGQEWTEEFMDFSDSDVIIVGGGPSGLMAAKELSER-GVQTMVVEKNNYLGGGFWLGGFLMNKVTVRDPAQNVLEDLDVDFKRSQDSEGLYVANGPEACSGLIKAACDAGAKMQNMTEFTDIVIREDHRVGGIVMNWTPV 157          
The following BLAST results are available for this feature:
BLAST of CV884940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
THI4_FERNB2.371e-1430.56Putative thiazole biosynthetic enzyme OS=Fervidoba... [more]
THI4_HALSA4.044e-1431.37Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_HALS34.044e-1431.37Putative thiazole biosynthetic enzyme OS=Halobacte... [more]
THI4_METMA9.008e-1432.24Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_METBF9.008e-1433.11Putative thiazole biosynthetic enzyme OS=Methanosa... [more]
THI4_HALMA1.177e-1330.77Putative thiazole biosynthetic enzyme OS=Haloarcul... [more]
THI4_AERPE1.537e-1329.33Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_HALWD2.007e-1333.97Putative thiazole biosynthetic enzyme OS=Haloquadr... [more]
THI4_ARCFU2.621e-1330.19Putative thiazole biosynthetic enzyme OS=Archaeogl... [more]
THI4_NATPD5.839e-1329.41Putative thiazole biosynthetic enzyme OS=Natronomo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011E06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884940 ID=CV884940; Name=CV884940; organism=Citrus sinensis; type=EST; length=743bp
CTGCAAATCAAATTACTTCTCATTATCAAACTTCTAAGCAGCAGGGGAAG
GAGGGGTAAAAAAAAAAAACCATGGCAGCCATGGCTTCTACAGCTTTCGC
TCCTTCAGTTTCGTCCACCACCAATAAGCTCTTTGACTCATCCTTTCATG
GGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCAAATCTTCT
CGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTTATGACTT
GAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTCTCGTGAAA
TGACACGCAGGTACATGACGGACATGATCACTTATGCTGACACTGATGTG
GTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATGAGCTCAG
CAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGTTAGCCCCG
GCGGTGGCGCGTGGCTCGGTGGACAGCTCTTCTCTGCCATGGTTGTGCGC
AAACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACTACGATGAGCA
AGACAACTATGTTGTGATCAAGCATGCAGCGCTGTTCACCTCCACTATAA
TGAGCAAGCTCCTGGCCCGCCCCAACGTCAAGCTCTTTAATGCAGTGGCA
GCCGAGGACTTGATAGTCAAAGGCGGCAGAGTTGGTGGTGTGGTGACCAA
CTGGGCGTTGGTGTCAATGAATCACGATACACAGTCTTGCATG
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