CV884939

Overview
NameCV884939
Unique NameCV884939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length978
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884939 vs. ExPASy Swiss-Prot
Match: PERX_WHEAT (Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.588e-17
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = -3 
Query:  650 RGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSF 883
            RGF VID++K  +E  C + VSCADILT+AA  SV   GGPSW VPLGRRDS  AN A AN +LPG   +  EL+++F
Sbjct:    3 RGFGVIDSIKTQIEAICNQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSIDANEAEANSDLPGFNSSRSELEAAF 80
[Close]
BLAST of CV884939 vs. ExPASy Swiss-Prot
Match: APXT_ARATH (L-ascorbate peroxidase T, chloroplastic OS=Arabidopsis thaliana GN=APXT PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 8.439e-11
Identity = 57/198 (28.79%), Postives = 88/198 (44.44%), Query Frame = -3 
Query:  248 VSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLP--GPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKG----LLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNL 823
            +S AD+  +A+  ++  +GGP   +  GR D     +      LP  GP    D L+  F  +GL+DK ++VALSGAHT GRA+         D +  GKP+     T            G G             FDN YF +++ ++     +L +D  LF  P     A  E +  +  AFFK++  +  ++ NL
Sbjct:  165 ISYADLFQLASATAIEEAGGPDIPMKYGRVDVVAPEQCPEEGRLPDAGPPSPADHLRDVFYRMGLDDK-EIVALSGAHTLGRAR--------PDRSGWGKPETKYTKT------------GPGEAGGQSWTVKWLKFDNSYFKDIKEKRDDDLLVLPTDAALFEDPSFKNYA--EKYAEDVAAFFKDYAEAHAKLSNL 339
The following BLAST results are available for this feature:
BLAST of CV884939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
PERX_WHEAT1.588e-1757.69Peroxidase (Fragment) OS=Triticum aestivum PE=3 SV... [more]
APXT_ARATH8.439e-1128.79L-ascorbate peroxidase T, chloroplastic OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011E05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884939 ID=CV884939; Name=CV884939; organism=Citrus sinensis; type=EST; length=978bp
ATTAGATTAAACTCAAGTTTGATCGTTAATTTATTTGAAAGTACATAACA
TGTTTCAGGCAAAACGATCAGATTAAATTTGAGTTTGTTAAGCACAAAAA
CTCTCGCGCATATGCTGCAAGCTAGCTTATTTAGAAAGAGCTGACCAAAT
CACCCTCTGATGATGATGATCTTGTTGCAATATTACTGTTTCCATTGACC
CTCCTGCAGTTCAATCTAATCTCCCCTTGATTTCCTGTCAGTGGTTTCAA
ATTTCCCATTCTTATCATTGAGGTCACAAAGTTTTTAAAGAAAGCATTCT
GGTTCCTCCCAAAGTCCTCGACAATGGCAGCGGTATCGGCACCAGGAGTC
GAAAACAACTCTTGATCACTCTGCAGAAGGCCTTTGCGGCCTCTAAGATT
GGAGAAGTATTTGTTGTCGAAAACATCAGGTGTCGTGACATCAAAATTAG
CAAGAACGCCGCCGTTTCCACCTTGTGGGCATAGTTTCCTCAGTTGTTGT
AAGAAGGTTGCGTCTAGGGTTGGGTCTGGCTTGCCAGTGTTGTTAAAATC
GTATAATCTGCCCCTGAAAAATTGGCACTGAGCCCTTCCGAACGTGTGTG
CTCCGGAGAGTGCAACAAGATCAAGCTTGTCATTGAGGCCAACATTTCTA
AAACTAGATTTGAGCTCATCAAGAGTATCAAATGGTCCTGGAAGATTCTG
ATTTGCAAGAGCTCTGTTTGCCGTTCTGCTGTCTCTTCTTCCCAATGGAA
CTGCCCATGACGGACCCCCTGACAAAGCAACGGATCGTTCAGCCGCAATA
GTAAGAATATCAGCGCAGGAAACAACCCTTGGACATGCCCTTTCAACGGC
AGCTTTCATGTTATCAATAACTTCAAAACCCCTCGCCGAATTGTTATTTG
GCGCAGCAAATTTCTCGCTGTCTATGGTGTTAGTGCTGTCCAGCAAAATC
GATGCATCACACCCATCAACAAAACAGT
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