CV884924

Overview
NameCV884924
Unique NameCV884924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: CP3A1_RAT (Cytochrome P450 3A1 OS=Rattus norvegicus GN=Cyp3a1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 35/102 (34.31%), Postives = 54/102 (52.94%), Query Frame = -1
Query:  569 IPKGTLLFVNLWSMGRDPKIWKNPLEFQPERFFSQSNSEIDVRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKVTSPDGVVDMSERPGLSSP 874
            +PKG+++ +  +++ RDP+ W  P EF+PERF  ++   ID     Y  LPFG G R C G+  A+  +  AL  ++Q F F+      +     R GL  P
Sbjct:  389 MPKGSVVMIPSYALHRDPQHWPEPEEFRPERFSKENKGSID----PYVYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSFQPCKETQIPLKLSRQGLLQP 486          
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: CP1A3_ONCMY (Cytochrome P450 1A3 OS=Oncorhynchus mykiss GN=cyp1a3 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 37/103 (35.92%), Postives = 59/103 (57.28%), Query Frame = -1
Query:  575 YIIPKGTLLFVNLWSMGRDPKIWKNPLEFQPERFFSQSNSEID-VRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKVTSPDGVVDMSERPGLS 880
            Y IPK T +F+N W +  DP++WK P  F P+RF S   +E++ + G   ++L FG G+R C G ++   E+   LA ++Q   F+   P   +DM+   GL+
Sbjct:  404 YFIPKDTCVFINQWQVNHDPELWKEPSSFNPDRFLSADGTELNKLEG--EKVLVFGMGKRRCIGEAIGRNEVYLFLAILLQRLRFQ-EKPGHPLDMTPEYGLT 503          
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: CP1A1_LIZAU (Cytochrome P450 1A1 OS=Liza aurata GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = -1
Query:  575 YIIPKGTLLFVNLWSMGRDPKIWKNPLEFQPERFFSQSNSEID-VRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKVTSPDGVVDMSERPGLS 880
            Y IPK T +F+N W +  DP++WK P  F P+RF S   +E++ V G   +++ FG G+R C G  +A  E+   LA +IQ   F    P   +DM+   GL+
Sbjct:  404 YYIPKDTCVFINQWQINHDPELWKEPSSFNPDRFLSADGTEVNKVDG--EKVMVFGLGKRRCIGEVIARNEVYMFLAILIQKLHF-YNLPGEPLDMTPEYGLT 503          
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: CP17A_ICTPU (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ictalurus punctatus GN=cyp17a1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = -1
Query:  623 YIIPKGTLLFVNLWSMGRDPKIWKNPLEFQPERFFSQSNSEIDVRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKV 880
            Y + KGT + VNLWS+  D K WKNP  F PERF ++  + +    L Y  LPFG G R C G +LA  EL   L+ ++Q F  +V
Sbjct:  387 YTVQKGTRVIVNLWSLHHDEKEWKNPELFNPERFLNEEGNSLCCPSLSY--LPFGAGVRVCLGEALAKLELFLFLSWILQRFTLEV 470          
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: CP3AS_BOVIN (Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 39/119 (32.77%), Postives = 58/119 (48.74%), Query Frame = -1
Query:  518 IPKGTLLFVNLWSMGRDPKIWKNPLEFQPERFFSQSNSEIDVRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKVTSPDGVVDMSERPGLSSPRAQDLVCVPVARCAPSI 874
            IPKGT + V L+ +  +P++W  P EF+PERF   +   I+     Y  LPFGTG R C G+  A+  +  AL  ++Q F FK      +       GL+ P    ++ V      P +
Sbjct:  388 IPKGTTVLVPLFVLHNNPELWPEPEEFRPERFSKNNKDSIN----PYVYLPFGTGPRNCLGMRFAIMNIKLALVRILQNFSFKPCKETQIPLKLYTQGLTQPEQPVILKVVPRGLGPQV 502          
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: CP3AC_CANFA (Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A12 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = -1
Query:  626 IPKGTLLFVNLWSMGRDPKIWKNPLEFQPERFFSQSNSEIDVRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFK 874
            IPKGT++ V  +++ RD  +W  P EF+PERF  ++   I+     Y  LPFGTG R C G+  A+  +  AL  ++Q F FK
Sbjct:  388 IPKGTVVMVPTFTLHRDQSLWPEPEEFRPERFSRKNKDSIN----PYTYLPFGTGPRNCIGMRFAIMNMKLALVRVLQNFSFK 466          
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: CP1A2_PONAB (Cytochrome P450 1A2 OS=Pongo abelii GN=CYP1A2 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = -1
Query:  560 YIIPKGTLLFVNLWSMGRDPKIWKNPLEFQPERFFSQSNSEIDVRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKVTSPDGV-VDMSERPGLSSPRAQ 880
            + IPK   +FVN W +  DP++W++P EF PERF +   + I+ + L  +++ FG G+R C G  LA  E+   LA ++Q  +F V  P GV VD++   GL+   A+
Sbjct:  399 FYIPKECCVFVNQWQVNHDPELWEDPSEFWPERFLTTDGTAIN-KPLSEKVMLFGMGKRRCIGEVLANWEVFLFLAILLQQLEFSV--PPGVKVDLTPIYGLTMKHAR 503          
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: CP1A1_RAT (Cytochrome P450 1A1 OS=Rattus norvegicus GN=Cyp1a1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 40/107 (37.38%), Postives = 64/107 (59.81%), Query Frame = -1
Query:  560 YIIPKGTLLFVNLWSMGRDPKIWKNPLEFQPERFFSQSNSEIDVRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKVTSPDGVVDMSERPGLSSPRAQ 880
            + IPKG  +FVN W +  D ++W +P EF+PERF + S + +D + L  +++ FG G+R C G ++   E+   LA ++Q  +F V SP   VDM+   GL+   A+
Sbjct:  403 FYIPKGHCVFVNQWQVNHDQELWGDPNEFRPERFLTSSGT-LD-KHLSEKVILFGLGKRKCIGETIGRLEVFLFLAILLQQMEFNV-SPGEKVDMTPAYGLTLKHAR 506          
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: CP1A1_MICTO (Cytochrome P450 1A1 OS=Microgadus tomcod GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 37/102 (36.27%), Postives = 57/102 (55.88%), Query Frame = -1
Query:  575 YIIPKGTLLFVNLWSMGRDPKIWKNPLEFQPERFFSQSNSEIDVRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKVTSPDGVVDMSERPGLS 880
            Y IPK T +F+N W +  DP++WK P  F P+RF S   SE++ +    +++ FG G+R C G  +A  E+   LA ++Q   F    P   +DM+   GL+
Sbjct:  400 YFIPKDTCVFINQWQINHDPELWKEPSTFNPDRFLSADASELN-KLAGEKVMLFGMGKRRCIGEMVARNEVFLFLAILVQRLTFHAV-PGEPLDMTPEYGLT 499          
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: CP1A1_LIZSA (Cytochrome P450 1A1 OS=Liza saliens GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = -1
Query:  575 YIIPKGTLLFVNLWSMGRDPKIWKNPLEFQPERFFSQSNSEID-VRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKVTSPDGVVDMSERPGLS 880
            Y IPK T +F+N W +  DP++WK P  F P+RF S   +E++ V G   +++ FG G+R C G  +A  E+   LA +IQ   F    P   +DM+   GL+
Sbjct:  404 YYIPKDTCVFINQWQINHDPELWKEPSSFNPDRFLSADGTEVNKVDG--EKVMIFGMGKRRCIGEVIARNEVYLFLAILIQKLHF-CNLPGEPLDMTPEYGLT 503          
The following BLAST results are available for this feature:
BLAST of CV884924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
CP3A1_RAT1.898e-1134.31Cytochrome P450 3A1 OS=Rattus norvegicus GN=Cyp3a1... [more]
CP1A3_ONCMY1.898e-1135.92Cytochrome P450 1A3 OS=Oncorhynchus mykiss GN=cyp1... [more]
CP1A1_LIZAU1.898e-1137.86Cytochrome P450 1A1 OS=Liza aurata GN=cyp1a1 PE=2 ... [more]
CP17A_ICTPU1.898e-1144.19Steroid 17-alpha-hydroxylase/17,20 lyase OS=Ictalu... [more]
CP3AS_BOVIN2.479e-1132.77Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2... [more]
CP3AC_CANFA2.479e-1140.96Cytochrome P450 3A12 OS=Canis familiaris GN=CYP3A1... [more]
CP1A2_PONAB2.479e-1137.96Cytochrome P450 1A2 OS=Pongo abelii GN=CYP1A2 PE=2... [more]
CP1A1_RAT2.479e-1137.38Cytochrome P450 1A1 OS=Rattus norvegicus GN=Cyp1a1... [more]
CP1A1_MICTO2.479e-1136.27Cytochrome P450 1A1 OS=Microgadus tomcod GN=cyp1a1... [more]
CP1A1_LIZSA2.479e-1137.86Cytochrome P450 1A1 OS=Liza saliens GN=cyp1a1 PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011D09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884924 ID=CV884924; Name=CV884924; organism=Citrus sinensis; type=EST; length=880bp
TGATATCAATTTTCTTGTAGTGCGAAGGATTTCTTATTCTAATAGTAGTG
ACAAGAAAGGATACATAAATAGATTGAGGCTATGATTCTTAAAAAAAAAG
AATTTTCAAAGAAATTATCGTGCATGATGGGTAACGTATCAATCAAATTA
GGTCCAAAATTGAATTCATCGTTTAGGTGTCCATAATGTCAAACACGTTG
AGGAAAATTTTAGATTTTCCGTTGAAATTTCAACGATCACTAATCGTTGA
TCTTGAAGTCATGCAAAGTATCATAGTCTTTTGAGTTTCAACCTAAGACG
TGGCCATATTGTGGACCATAAGAAATTTTCAAAGATCACCATGTCGCTAC
ATTGTTCAAGTTCTTGAATTTCAACGAAAGATGTAGAATTTTCTTCTACG
TGCGACAGCGACACCTTACTGTCCAACCACTTTGAGTTGAGTTAACCACA
CATTAAACAGAGACACTGACTGAACACTGCTAAAGACACTTTAATTTCAA
CGTACATCCGAATTTACGATACTAGGAGCACAACGTGCAACTGGCACGCA
CACAAGATCCTGTGCTCTTGGAGATGATAATCCTGGGCGTTCAGACATAT
CAACCACACCATCGGGACTCGTTACTTTGAAATCGAAACACTGAATCATA
GATGCTAGAGCTGTCGGCAACTCTTGCATGGCTAAAGAAAGGCCAGGGCA
GCCTCTTCTCCCAGTGCCAAATGGCAGCAATTGGTAATGCAATCCCCTAA
CATCAATCTCACTATTTGACTGTGAGAAGAATCGTTCTGGCTGAAATTCC
AACGGGTTCTTCCAAATTTTGGGGTCCCTACCCATGGACCAAAGGTTCAC
AAACAACAGAGTGCCTTTAGGAATTATGTA
back to top