CV884924

Overview
NameCV884924
Unique NameCV884924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: CP1A1_BALAC (Cytochrome P450 1A1 OS=Balaenoptera acutorostrata GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 40/106 (37.74%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  563 YIIPKGTLLFVNLWSMGRDPKIWKNPLEFQPERFFSQSNSEIDVRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKVTSPDGVVDMSERPGLSSPRA 880
            + IPKG  +FVN W +  D K+W +P  F PERF + ++  I+ + L  +++ FG G+R C G ++A  E+   LA ++Q  +F+VT P   VDM+   GL+   A
Sbjct:  403 FYIPKGRCVFVNQWQINHDQKLWDDPSAFWPERFLT-ADGTIN-KALSEKVILFGLGKRKCIGETIARWEVFLFLAILLQQVEFRVT-PGVKVDMTPVYGLTMKHA 505          
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: C89A2_ARATH (Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CYP89A2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 36/99 (36.36%), Postives = 59/99 (59.60%), Query Frame = -1
Query:  587 YIIPKGTLLFVNLWSMGRDPKIWKNPLEFQPERFFSQSNSEIDVRGLH-YQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKVTSPDGVVDMSER 880
            Y +PK   +   +  +GRDP  W+ P+ F+PERF  +  + +D+ G    +++PFG GRR CPG+ LAM  L   +A+M++ F +K       VD++E+
Sbjct:  389 YKVPKNGTINFMVAEIGRDPVEWEEPMAFKPERFMGEEEA-VDLTGSRGIKMMPFGAGRRICPGIGLAMLHLEYYVANMVREFQWKEVQ-GHEVDLTEK 485          
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: CP3A5_HUMAN (Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 37/102 (36.27%), Postives = 53/102 (51.96%), Query Frame = -1
Query:  569 IPKGTLLFVNLWSMGRDPKIWKNPLEFQPERFFSQSNSEIDVRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKVTSPDGVVDMSERPGLSSP 874
            IPKG+++ +  +++  DPK W  P EF+PER FS+    ID     Y   PFGTG R C G+  A+  +  AL  ++Q F FK      +    +  GL  P
Sbjct:  388 IPKGSMVVIPTYALHHDPKYWTEPEEFRPER-FSKKKDSID----PYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQIPLKLDTQGLLQP 484          
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: C71AK_ARATH (Cytochrome P450 71A20 OS=Arabidopsis thaliana GN=CYP71A20 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = -1
Query:  542 YIIPKGTLLFVNLWSMGRDPKIWKNPLE-FQPERFFSQSNSEIDVRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKV-TSPDGVV-DMSERPGLSSPRAQDLVCVP 880
            Y IP GT + VN W++ RD   W    E F+PER     ++ +D +G  ++ +PFG+G+R CPG+      +   LA++++ F++++   P  V  D++E  GL   R   L+ +P
Sbjct:  382 YNIPAGTQVIVNAWAIQRDTTTWGTDAEEFKPERHL---DTNLDFQGQDFKFIPFGSGKRICPGIGFTSALIGVTLANIVKRFNWRMDVEPQRVQHDLTEATGLVVFRKFPLIAIP 494          
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: C71AG_ARATH (Cytochrome P450 71A16 OS=Arabidopsis thaliana GN=CYP71A16 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 42/117 (35.90%), Postives = 62/117 (52.99%), Query Frame = -1
Query:  542 YIIPKGTLLFVNLWSMGRDPKIW-KNPLEFQPERFFSQSNSEIDVRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKV-TSPDGV--VDMSERPGLSSPRAQDLVCVP 880
            Y I  GT + +N W++ RD   W  +  EF+PER F   +S  D  G +++ +PFG GRR CPG+ L        LA++++ FD++V   P G    D+ E  G+   R   LV  P
Sbjct:  381 YDITAGTQVIINAWAIQRDTATWGSDAQEFRPERHF---DSTWDFVGRNFKYIPFGAGRRLCPGIGLGSVMASVTLANLVKRFDWRVEDGPSGYDKPDLVEGAGIDVCRKFPLVVFP 494          
BLAST of CV884924 vs. ExPASy Swiss-Prot
Match: C71AF_ARATH (Cytochrome P450 71A15 OS=Arabidopsis thaliana GN=CYP71A15 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 38/116 (32.76%), Postives = 64/116 (55.17%), Query Frame = -1
Query:  542 YIIPKGTLLFVNLWSMGRDPKIWK-NPLEFQPERFFSQSNSEIDVRGLHYQLLPFGTGRRGCPGLSLAMQELPTALASMIQCFDFKVTS--PDGVVDMSERPGLSSPRAQDLVCVP 880
            Y I  GT +  N W++ RD   W  +  EF+PER     +S +D RG +++ +PFG+GRR CPG+  AM  +   LA+++  F++++ +       D++E  G+   R   L+  P
Sbjct:  381 YDIAAGTQVITNAWAIQRDIVTWGIDAEEFRPERHL---DSPLDFRGTNFEYIPFGSGRRICPGIGFAMALVEVTLANLVNRFNWRMDARLSGDEYDLAEATGIDVCRKFPLIVFP 493          
The following BLAST results are available for this feature:
BLAST of CV884924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
CP1A1_BALAC7.212e-1137.74Cytochrome P450 1A1 OS=Balaenoptera acutorostrata ... [more]
C89A2_ARATH7.212e-1136.36Cytochrome P450 89A2 OS=Arabidopsis thaliana GN=CY... [more]
CP3A5_HUMAN9.419e-1136.27Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1... [more]
C71AK_ARATH9.419e-1132.76Cytochrome P450 71A20 OS=Arabidopsis thaliana GN=C... [more]
C71AG_ARATH9.419e-1135.90Cytochrome P450 71A16 OS=Arabidopsis thaliana GN=C... [more]
C71AF_ARATH9.419e-1132.76Cytochrome P450 71A15 OS=Arabidopsis thaliana GN=C... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011D09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884924 ID=CV884924; Name=CV884924; organism=Citrus sinensis; type=EST; length=880bp
TGATATCAATTTTCTTGTAGTGCGAAGGATTTCTTATTCTAATAGTAGTG
ACAAGAAAGGATACATAAATAGATTGAGGCTATGATTCTTAAAAAAAAAG
AATTTTCAAAGAAATTATCGTGCATGATGGGTAACGTATCAATCAAATTA
GGTCCAAAATTGAATTCATCGTTTAGGTGTCCATAATGTCAAACACGTTG
AGGAAAATTTTAGATTTTCCGTTGAAATTTCAACGATCACTAATCGTTGA
TCTTGAAGTCATGCAAAGTATCATAGTCTTTTGAGTTTCAACCTAAGACG
TGGCCATATTGTGGACCATAAGAAATTTTCAAAGATCACCATGTCGCTAC
ATTGTTCAAGTTCTTGAATTTCAACGAAAGATGTAGAATTTTCTTCTACG
TGCGACAGCGACACCTTACTGTCCAACCACTTTGAGTTGAGTTAACCACA
CATTAAACAGAGACACTGACTGAACACTGCTAAAGACACTTTAATTTCAA
CGTACATCCGAATTTACGATACTAGGAGCACAACGTGCAACTGGCACGCA
CACAAGATCCTGTGCTCTTGGAGATGATAATCCTGGGCGTTCAGACATAT
CAACCACACCATCGGGACTCGTTACTTTGAAATCGAAACACTGAATCATA
GATGCTAGAGCTGTCGGCAACTCTTGCATGGCTAAAGAAAGGCCAGGGCA
GCCTCTTCTCCCAGTGCCAAATGGCAGCAATTGGTAATGCAATCCCCTAA
CATCAATCTCACTATTTGACTGTGAGAAGAATCGTTCTGGCTGAAATTCC
AACGGGTTCTTCCAAATTTTGGGGTCCCTACCCATGGACCAAAGGTTCAC
AAACAACAGAGTGCCTTTAGGAATTATGTA
back to top