CV884923

Overview
NameCV884923
Unique NameCV884923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884923 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.532e-19
Identity = 59/133 (44.36%), Postives = 77/133 (57.89%), Query Frame = 3
Query:   33 SATILLLLSSYAKASFILT--LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPM 425
            SA + LLL+ +A  +   T  + NNC   +WPA     G PV   GGF L S    S   PA   +GRIWARTGC++  G  SC TGDCG +L C+ L G  PATLA+F++  G      Y +S++DGFN+ M
Sbjct:    4 SAVLFLLLAVFAAGASAATFNIKNNCGSTIWPA-----GIPV--GGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNGGSGSCQTGDCGGQLSCS-LSGQPPATLAEFTIGGGSTQ-DFYDISVIDGFNLAM 127          
BLAST of CV884923 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.928e-19
Identity = 60/150 (40.00%), Postives = 83/150 (55.33%), Query Frame = 3
Query:   33 SATILLLLSSYAKASFILT--LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEGKGV-CPVVGC 473
            SA + LLL+ +A  +   T  + NNC F VWPA     G PV   GGF L+S    +   PA   +GRIW RTGC++ +G+ SC TGDC   L C   G   PATLA++++  G  D   Y +S++DG+N+ M  +   G  + C   GC
Sbjct:    5 SAVLFLLLAVFAAGASAATFRITNNCGFTVWPA-----GIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDCAGALSCTLSG--QPATLAEYTI-GGSQDF--YDISVIDGYNLAMDFSCSTGVALKCRDSGC 142          
BLAST of CV884923 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.297e-18
Identity = 57/133 (42.86%), Postives = 77/133 (57.89%), Query Frame = 3
Query:   33 SATILLLLSSYAKASFILT--LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPM 425
            SA + LLL+ +A  +   T  + NNC F VWPA     G PV   GGF L+S    +   PA   +GRIW RTGC++ +G+ SC TGDC   L C   G   PATLA++++  G  D   Y +S++DGFN+ M
Sbjct:    5 SAVLFLLLAVFAAGASAATFRITNNCGFTVWPA-----GIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDCAGALSCTLSG--QPATLAEYTI-GGSQDF--YDISVIDGFNLAM 125          
BLAST of CV884923 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.405e-18
Identity = 55/133 (41.35%), Postives = 76/133 (57.14%), Query Frame = 3
Query:   33 SATILLLLSSYAKASFILT--LVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPM 425
            SA +  LL+ +A  +   T  + NNC F VWPA     G PV   GGF L+S    +   PA   +GRIW RTGC++ +G+ SC TGDC   L C   G   PATLA++++  G  D   Y +S++DG+N+ M
Sbjct:    5 SAVLFFLLAVFAAGASAATFRITNNCGFTVWPA-----GIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDCAGALSCTLSG--QPATLAEYTI-GGSQDF--YDISVIDGYNLAM 125          
BLAST of CV884923 vs. ExPASy Swiss-Prot
Match: TLP_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os12g0628600 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.531e-16
Identity = 53/147 (36.05%), Postives = 76/147 (51.70%), Query Frame = 3
Query:    9 ASTSPIFISATILLLLSSYAKASFILTLVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPMTVTPHEG 446
            A++S + +   +  L +  A A+   T+ N C F VWPA  P  G   L  G  +       +   PA   SGR+W RTGC++   G+ SC TGDC   L C  L G  P TLA+F++  G  D   Y +S++DG+NV M+ +   G
Sbjct:    5 ATSSAVLVVVLVATLAAGGANAA-TFTITNRCSFTVWPAATPVGGGVQLSPGQTW-------TINVPAGTSSGRVWGRTGCSFDGSGRGSCATGDCAGALSCT-LSGQKPLTLAEFTI-GGSQDF--YDLSVIDGYNVAMSFSCSSG 139          
BLAST of CV884923 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.531e-16
Identity = 53/134 (39.55%), Postives = 72/134 (53.73%), Query Frame = 3
Query:   33 SATILLLLSSYAKASF---ILTLVNNCPFPVWPAIQPNAGHPVLERGGFYLHSLTHRSFPAPAQHWSGRIWARTGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQFSLHHGHNDLSSYGVSLVDGFNVPM 425
            S+T+L LL +   AS      T+ NNC + VWPA  P  G   L++G  +       +   PA   SGRIW RTGC++  G  SC TGDC   L C   G   PATLA+FS+   H+    Y +S++D +N+ M
Sbjct:    4 SSTVLFLLLAVFAASASAATFTITNNCGYTVWPAAIPVGGGQQLDQGQTW-------TLNVPAGTNSGRIWGRTGCSFNGGSGSCQTGDCAGALSCTLSG--QPATLAEFSIGGEHD---YYDISVIDVYNLAM 125          
The following BLAST results are available for this feature:
BLAST of CV884923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PR1A_HORVU1.532e-1944.36Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
RST3_AVESA9.928e-1940.00Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST1_AVESA1.297e-1842.86Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST2_AVESA8.405e-1841.35Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
TLP_ORYSJ3.531e-1636.05Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
RST4_AVESA3.531e-1639.55Thaumatin-like pathogenesis-related protein 4 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011D08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884923 ID=CV884923; Name=CV884923; organism=Citrus sinensis; type=EST; length=913bp
ACGAAATGGCCTCAACTTCGCCCATTTTCATTTCAGCAACTATCCTTCTT
CTCCTCAGCTCCTACGCCAAAGCAAGCTTCATACTGACCCTAGTCAACAA
CTGCCCCTTCCCCGTCTGGCCGGCCATCCAGCCCAACGCCGGCCACCCAG
TCCTCGAACGTGGCGGCTTCTATCTCCATAGCCTCACCCACCGCTCCTTC
CCCGCTCCGGCCCAGCACTGGTCGGGCCGGATCTGGGCCAGAACCGGCTG
CACCTACGCCCACGGCAAATTCTCCTGCGTCACGGGCGACTGCGGCCACC
GCTTGGAATGCAACGGACTCGGCGGGGCGACTCCAGCCACCCTGGCCCAG
TTCAGCCTCCACCACGGCCACAACGACCTCTCCTCCTACGGCGTCTCTCT
AGTCGACGGCTTCAACGTCCCCATGACTGTCACCCCGCACGAGGGCAAGG
GCGTCTGTCCGGTAGTGGGTTGTCGCGCTGACCTGCTAGCCACGTGTCCT
CAGAACCTGCAGGTGAGGTCACCGCCGGGTCACGGCCGCGTGGTGGCATG
TAAGAGTGGGTGTGAGGCGTTTGGTACGGACGAGCTGTGTTGTAGGAACC
ATTACAACAGTCCGCAGACATGCCGGGCTTCGAGCTTTTCGGAGTTCTTC
AAGCACGCTTGTCCAGCCACGATGACTTATGCCCATGACAGCCCTTCGCT
CATGCATGACTGCTCCTCGCCACGTGAGCTAAAAGTTATTTTCTGTCACT
AGAGAAGCATGAGAATAATAATAAGCTGGAGCATCAAGCTTCACAGTGCT
TAGGATTGTTGTGTTTGTTTTCGTCAATTAGCAGTATCTTGCTTTTTAAT
TAATCTCGTAACTAAAAAGAGAAATTAAAAATGATCAATGTGAGCTTGTG
TCATGTTGGGTGT
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