CV884922

Overview
NameCV884922
Unique NameCV884922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3799 contig Csv1_Contig3799:57..787. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884922 vs. ExPASy Swiss-Prot
Match: YD541_YEAST (Putative uncharacterized oxidoreductase YDR541C OS=Saccharomyces cerevisiae GN=YDR541C PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 77/263 (29.28%), Postives = 123/263 (46.77%), Query Frame = 1 
Query:    1 ICVTGANGFIRTWVVRTLLEKGYTNIHAAIFPGTDASHLFSLPGATKLNVRVY----EANILDNEAISRAIEGCKGVFHLASPNTLDDPKDPEKELLIPAVQGTLNVLEAAKKFG---VRRVVLTSSISSIVPNPNWPQGKVI-DETSWTDL--DFCKSHKI-WYSMSKTLAEKAAWEFAEKNGTDV----VAIHPATSLGP--FPQP---YVNASGAVLQRLLQGSKDTQ-EHYWLGAVHVKDVAKAQVLLFETSAASGRYL 726
            + V+GA+GFI   ++  LL++ Y  I        +A  L        L + +       N  D     R  E  + V H ASP   D   + EK+LLIPA++GT N+L + KK+    V RVV+TSS ++I+         V+  E SW +   + C+   I  Y  SK  AEKAAWEF ++N   +      ++P+   GP  F +    ++N S  ++  L+    +     +    + V+DVA A +  F+    +G+ L
Sbjct:    5 VLVSGASGFIALHILSQLLKQDYKVIGTVRSHEKEAKLLRQFQHNPNLTLEIVPDISHPNAFDKVLQKRGRE-IRYVLHTASPFHYDTT-EYEKDLLIPALEGTKNILNSIKKYAADTVERVVVTSSCTAIITLAKMDDPSVVFTEESWNEATWESCQIDGINAYFASKKFAEKAAWEFTKENEDHIKFKLTTVNPSLLFGPQLFDEDVHGHLNTSCEMINGLIHTPVNASVPDFHSIFIDVRDVALAHLYAFQKENTAGKRL 265
The following BLAST results are available for this feature:
BLAST of CV884922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
YD541_YEAST1.032e-1429.28Putative uncharacterized oxidoreductase YDR541C OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011D08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884922 ID=CV884922; Name=CV884922; organism=Citrus sinensis; type=EST; length=731bp
ATTTGCGTGACTGGAGCCAACGGGTTCATCAGAACATGGGTGGTCCGAAC
CCTTCTAGAAAAAGGCTACACCAACATTCACGCTGCCATCTTTCCCGGCA
CTGACGCATCCCACTTGTTCAGCCTCCCAGGCGCCACCAAGCTCAACGTC
CGTGTTTACGAGGCCAATATCTTAGACAACGAAGCAATTTCCAGGGCCAT
CGAGGGTTGCAAGGGGGTCTTCCATCTTGCCTCTCCTAACACCCTGGATG
ATCCCAAGGACCCCGAAAAGGAGCTGCTCATTCCTGCTGTTCAAGGCACC
CTCAATGTCTTAGAGGCTGCCAAGAAGTTTGGTGTCAGGCGTGTGGTGCT
CACCAGCTCCATTTCTTCCATTGTGCCTAATCCCAATTGGCCTCAAGGCA
AGGTCATTGATGAAACTTCTTGGACCGACCTTGACTTTTGCAAGTCTCAC
AAGATATGGTATTCAATGTCAAAGACACTAGCAGAAAAAGCAGCATGGGA
ATTTGCAGAGAAGAATGGAACGGATGTGGTGGCAATCCATCCAGCCACAT
CTCTTGGGCCATTTCCGCAGCCTTACGTGAACGCGAGCGGAGCTGTGCTG
CAGCGTTTGTTGCAGGGTTCAAAAGACACTCAAGAGCATTACTGGCTGGG
AGCTGTGCATGTTAAAGATGTGGCTAAGGCTCAAGTGTTGCTTTTTGAAA
CTTCTGCTGCTTCTGGGAGATACCTCTGTAC
back to top