CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PROM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL1A) GN=gatA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.346e-29
Identity = 88/242 (36.36%), Postives = 130/242 (53.72%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPAT 849
            T +DL+   K  +++S++LV+  +  I+ L+P L+  + VN + ALS+A+  D  +++ +   L  L GIPI +KDN+ TK  + TT  S  L   V P ++ V  KL  AGAI++GK ++ E++   SS   S F    G   NP+ ++  P              L   SLG++T GSI  P+S   VVG+KPT G  SR G+I      D VGP    V+DAA +L  I+G D  D  T
Sbjct:    2 TFEDLRQKLKSGEVSSKELVQEKINRINELDPTLNSFLIVNTELALSKAEHID--KQIASGDHLPPLSGIPIAIKDNLCTKG-IKTTCASKILDNFVPPYESTVTKKLLNAGAIMIGKTNMDEFA-MGSSTETSAF----GPTLNPWNITKVPGGSSGGSAASVAAGLCYGSLGSDTGGSIRQPASFCGVVGMKPTYGRVSRWGLIAFASSLDQVGPFANNVSDAAEILQVISGKDELDSTT 235          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_GEOBB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=gatA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.346e-29
Identity = 94/243 (38.68%), Postives = 127/243 (52.26%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            I + TI +L    K  +++S +     L  I  ++  ++  I V P+ AL QA+ AD  R++ AAG +  L GIP+ LKD   TK  + TT GS  L   V P D   V KL++ GA+I+GK +  E++   SS   S F    G  KNP+ LS  P               A  +LGT+T GSI  P+S    VGLKPT G  SR GVI      D VGP+ R V D+A +L A+AG+D  D
Sbjct:    3 IFDLTIHELHEKLKAKEVSSVEATRAMLDRIEAVDSQVNAYITVTPEQALVQAEDAD--RRI-AAGEIAPLTGIPVGLKDIFVTKG-IRTTCGSRILENFVPPYDGTAVAKLKEQGAVIVGKLNQDEFA-MGSSNESSYF----GPCKNPWDLSCTPGGSSGGSAAAIAARTATATLGTDTGGSIRQPASHCGCVGLKPTYGRVSRYGVIAYASSLDQVGPLTRDVTDSALLLGAVAGYDPMD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ACIBT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=gatA PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.346e-29
Identity = 87/243 (35.80%), Postives = 124/243 (51.03%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +   +I++L     Q K +SR+L E YL  I +++P +   + V  + AL +AD AD   K   AG+   L GIP+  KD   TK  + TTAGS  L   + P DA VV K + AG + LGK ++ E++   +S+     S   G   NP+ L   P             +LA  + GT+T GSI  P+S   + GLKPT G  SR G+I      D  GP+ R+  D AY+++ IAG D  D
Sbjct:    4 LHRLSIRELAEGLSQAKFSSRELTEHYLKRIAKIDPQVKSYVTVTSEQALREADAADAALK---AGNATALTGIPLAHKDIFCTKG-IKTTAGSKMLDNFISPYDATVVEKTKAAGLVTLGKVNMDEFAMGSTSE-----SSYVGATSNPWALDHVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGIIAYASSLDQAGPMARSAEDCAYLMNVIAGHDAKD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_GEOSL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter sulfurreducens GN=gatA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.369e-29
Identity = 90/241 (37.34%), Postives = 124/241 (51.45%), Query Frame = 1
Query:  121 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            E T+ +L     + +++S +     L  I   +  ++  I V PD AL+ A+ AD  R++ AAG L  L G+P+ LKD   T+  + TT GS  L   + P D  VV KLR+AGA+I+GK +  E++        SG S   G  KNP+ L+  P               A  +LGT+T GSI  P+S    VGL+PT G  SR GVI      D VGP+ R V D A +L A+AG D  D
Sbjct:    5 ELTLHELHDKLAKREVSSVEATRALLARIEATDSRVNAYITVTPDEALAAAEAAD--RRI-AAGGLTPLTGVPVALKDIFVTRG-IRTTCGSKILGNFIPPYDGTVVAKLREAGAVIVGKLNQDEFA-----MGSSGESSAFGATKNPWNLACIPGGSSSGSAAAIAARSATATLGTDTGGSIRQPASHCGCVGLRPTYGRVSRYGVIAYASSLDQVGPVTRDVTDCALMLGAVAGHDPLD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CHRSD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gatA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.369e-29
Identity = 90/248 (36.29%), Postives = 129/248 (52.02%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRA 855
            + + T+ +L    +  + +SR+L +  L  I RL+  L+  I V  + AL+ AD AD  R   A+G    L G+P+ LKD   T+  + T+ GS  L   V P DA VV K+R+AG + LGK ++ E++   SS   S +    G  KNP+ LSA P              L   +LGT+T GSI  P++   + GLKPT G  SR G++      D  GP+ RT AD A +L+ IAG D  D  + A
Sbjct:    1 MHDKTLTELAAGLRAGEFSSRELCQSALDRIQRLDGDLNSFISVTAEQALADADAADQAR---ASGDAAALAGLPLALKDIFCTQG-VRTSCGSKMLDSFVAPYDATVVEKIRQAGGVSLGKTNMDEFA-MGSSNENSFY----GPVKNPWDLSAVPGGSSGGSAAAVAAGLVPAALGTDTGGSIRQPAAFCGITGLKPTYGRVSRYGMVAYASSLDQGGPMARTAADCALLLETIAGHDVRDSTSVA 239          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_DEHSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain BAV1) GN=gatA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.734e-29
Identity = 87/239 (36.40%), Postives = 126/239 (52.72%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI       K +K++S +L + +L  I +L P +   + V P+ ALSQA+ AD   K    G +R L GIP+ LKD + TK  + TT  S  L   V P +A VV KL K GA++LGK ++ E++   S++  + F+ R     NP+     P             + A  SLG++T GSI  P+S  SV G KP+ G+ SR G++      D +GP  +   D A V++AIAGFD  D
Sbjct:    8 TIAQSHKLLKDHKISSAELTKAHLERIEKLEPEIKAFMTVCPETALSQAEAAD---KAIKQGDIRPLTGIPMALKDVLCTKG-IRTTCSSKMLENFVPPYNAHVVDKLAKEGAVLLGKTNMDEFAMGSSTENSAYFTTR-----NPWNTDKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGYKPSYGMVSRYGLVAFASSLDQIGPFTKDAMDCALVMNAIAGFDDRD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ALHEH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.734e-29
Identity = 89/243 (36.63%), Postives = 126/243 (51.85%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + E T+ ++  A +  + +SR++ E +L  I  LNP+ + VI   P+ AL+ AD AD      AAG    L G+P++ KD   T+  + T+ GS  L     P DA VV KL  AG ++LGKA++ E++   SS   S +    G  KNP+ L A P              LA  + GT+T GSI  P++   + GLKPT G  SR G+I      D  GP+ RT  D A +L  +AGFD  D
Sbjct:    1 MHEKTVAEIAAALRAGEFSSREVTEAFLARIDALNPVTNAVITPTPEQALAAADAADQRI---AAGEAGPLTGVPLVHKDIFCTQG-VRTSCGSRMLDNFTAPYDATVVGKLADAGMVMLGKANMDEFA-MGSSNETSYY----GPVKNPWDLDAVPGGSSGGSAAAVAGRLAPAATGTDTGGSIRQPAALCGLSGLKPTYGRVSRYGMIAFASSLDQGGPMARTCEDLALLLGGMAGFDTRD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_DEHSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides sp. (strain CBDB1) GN=gatA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.271e-28
Identity = 87/239 (36.40%), Postives = 125/239 (52.30%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI       K  K++S +L + +L  I +L P +   + V P+ ALSQA+ AD   K    G +R L GIP+ LKD + TK  + TT  S  L   V P +A VV KL K GA++LGK ++ E++   S++  + F+ R     NP+     P             + A  SLG++T GSI  P+S  SV G KP+ G+ SR G++      D +GP  +   D A V++AIAGFD  D
Sbjct:    8 TIAQSHKLLKDRKISSAELTKAHLERIEKLEPEIKAFMTVCPETALSQAEAAD---KAIKQGDIRPLTGIPMALKDVLCTKG-IRTTCSSKMLENFVPPYNAHVVDKLAKEGAVLLGKTNMDEFAMGSSTENSAYFTTR-----NPWNTDKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGYKPSYGMVSRYGLVAFASSLDQIGPFTKDAMDCALVMNAIAGFDDRD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_COXBU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii GN=gatA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.271e-28
Identity = 88/243 (36.21%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + TI +L+   +   ++S +L + +L  I  +NP L+  I +  + AL+QA  AD      A G    L GIPI  KD   TKD + T+ GS  L   + P DA VV +L KAGAI++GK ++ E++   SS   S F    G  KNP+ L   P              L   + GT+T GSI  P++   + GLKPT G  SR G+I      D  GP+ +T  DAA +L+A+AG D  D
Sbjct:    1 MHQKTIAELKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARL---AKGEATSLTGIPIAQKDIFCTKD-IKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFA-MGSSNENSYF----GAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAGPMAQTAEDAALLLNALAGHDAKD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_COXBR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=gatA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.271e-28
Identity = 88/243 (36.21%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + TI +L+   +   ++S +L + +L  I  +NP L+  I +  + AL+QA  AD      A G    L GIPI  KD   TKD + T+ GS  L   + P DA VV +L KAGAI++GK ++ E++   SS   S F    G  KNP+ L   P              L   + GT+T GSI  P++   + GLKPT G  SR G+I      D  GP+ +T  DAA +L+A+AG D  D
Sbjct:    1 MHQKTIAELKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARL---AKGEATSLTGIPIAQKDIFCTKD-IKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFA-MGSSNENSYF----GAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAGPMAQTAEDAALLLNALAGHDAKD 234          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_PROM13.346e-2936.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_GEOBB3.346e-2938.68Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_ACIBT3.346e-2935.80Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_GEOSL4.369e-2937.34Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_CHRSD4.369e-2936.29Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_DEHSB9.734e-2936.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_ALHEH9.734e-2936.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_DEHSC1.271e-2836.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_COXBU1.271e-2836.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_COXBR1.271e-2836.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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