CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSEE4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas entomophila (strain L48) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.114e-24
Identity = 82/243 (33.74%), Postives = 116/243 (47.74%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ ++         +S +L    L  I +L+P L+  I V  + AL QA  AD  R   AAG    L G PI  KD   T+  + T+ GS  L     P DA VV KL +AG + LGK ++ E++   +++     S   G  KNP+ L   P              L   + GT+T GSI  P++  ++ GLKPT G  SR G+I      D  GP+ RT  D A +L  +AGFD  D
Sbjct:    1 MHQLTLAEIARGLADKSFSSEELTGALLSRIKQLDPQLNSFITVTEEQALHQARAADARR---AAGETGALLGAPIAHKDLFCTQG-VRTSCGSKMLDNFTAPYDATVVAKLAEAGMVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALLLQGMAGFDSKD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_NATTJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.114e-24
Identity = 80/244 (32.79%), Postives = 123/244 (50.41%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + E T+ +++   +Q   +S +LV      I      +   I +  + AL+Q+ + D +R   A G   G L GIP+ +KDNI TKD + T+  S  L   V P +A V+ KL +AGAII+GK ++ E++   S++  + F        NP+     P                 ++LG++T GSI  P+S   VVG+KPT G  SR G++      D +GP+ + V D A  LD I+G DH D
Sbjct:    3 LHELTLMEVKRGLEQGDFSSEELVTSVYDRIEETEDHIKAYITLTKEQALAQSKEIDSQR---AKGEELGPLAGIPVAIKDNICTKD-VTTSCASKILEDFVPPYNATVISKLAEAGAIIVGKTNMDEFAMGSSTENSAFFVT-----SNPWDTERVPGGSSGGSAASVASAQVPLALGSDTGGSIRQPASFCGVVGMKPTYGRVSRYGLVAFASSLDQIGPLSKNVEDTALALDIISGHDHMD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSEPW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas putida (strain W619) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.455e-24
Identity = 82/243 (33.74%), Postives = 115/243 (47.33%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ ++         +S +L    L  I +L+P L+  I V  + AL QA  AD  R   AAG    L G PI  KD   T   + T+ GS  L     P DA VV KL +AG + LGK ++ E++   +++     S   G  KNP+ L   P              L   + GT+T GSI  P++  ++ GLKPT G  SR G+I      D  GP+ RT  D A +L  +AGFD  D
Sbjct:    1 MHQLTLAEIARGLADKSFSSEELTGALLARIQQLDPQLNSFISVTEELALGQARAADARR---AAGETGALLGAPIAHKDLFCTNG-VRTSCGSKMLDNFKAPYDATVVAKLAEAGMVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALLLQGMAGFDAKD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CYAP8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 8801) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.455e-24
Identity = 81/239 (33.89%), Postives = 123/239 (51.46%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A+I++L       + ++ ++    L  I  + P +   + +  D   +  KA  ++K+ A   +  L GIPI +KDN++TK  + TT GS  L   + P ++ V  KL++ GA+++GK +L E++   SS   SG+        NP+ L   P                 V+LG++T GSI  P+S   VVGLKPT GL SR G++      D +GP  RTV D A VL AIAG+D  D
Sbjct:    2 ASIRELHQQLINKERSAVEITTEALERIAAIEPQVKSFLCITADRALETAKA-VDQKIAAKEEIGLLAGIPIGIKDNMSTKG-IPTTCGSRILENFIPPYESTVTQKLQEIGAVMVGKTNLDEFA-MGSSTENSGYQVTA----NPWDLERVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASLCGVVGLKPTYGLVSRFGLVAYGSSLDQIGPFGRTVEDVAIVLGAIAGYDAKD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ACIBL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidobacteria bacterium (strain Ellin345) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.455e-24
Identity = 86/243 (35.39%), Postives = 122/243 (50.21%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            I   TI   ++A ++ + T+  + E +  +I   +  ++  + ++ D AL+QA K D          L  L G+P+ +KD I+TK  + TTAGS  L   + P DA VV KL  AGA+ILGK +  E++   SS   S +    G  +NP   S  P               A  SLG++T GSI  P+S   VVGL PT G  SR G+I      D +GP  + V DAA +L+ IAG D  D
Sbjct:    3 INVLTIDATRIAIQERQATATAIAESFYKKIEAEDGEINAYLTLSRDRALAQAAKID--AIADRGDDLPRLAGLPVAIKDVISTKG-VRTTAGSKILEEFIAPYDATVVQKLEAAGAVILGKTNCDEFA-MGSSNENSAY----GPVRNPRDKSRVPGGSSGGSAAVVAAGTAVTSLGSDTGGSIRQPASFCGVVGLMPTYGRVSRYGLIAFASSLDHIGPFAKDVKDAAIMLEVIAGRDPMD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_RALPJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ralstonia pickettii (strain 12J) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.900e-24
Identity = 88/242 (36.36%), Postives = 116/242 (47.93%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIH---RLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +TIK L       ++++ +L   YL  I     LN   H   E     L+QA  AD      AAG+   L G+PI  KD   T+     TAGS  L   V P DA VV +L  AG + LGK ++ E++   SS   S F    G  KNP+ L   P             +LA  + GT+T GSI  P+S + + G+KPT G  SR G+I      D  GP+ RT  D A +L A+AGFD  D
Sbjct:    4 STIKALSAQLAAKEVSAEELARHYLSRIEAGAHLNAFTHVDAEAT---LAQARAADARI---AAGNAAPLTGVPIAHKDVFVTRG-WRATAGSKMLGNYVSPFDATVVERLGAAGMVTLGKTNMDEFA-MGSSNENSAF----GAVKNPWNLEHVPGGSSGGSAAAVAADLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMARTAEDCALLLSAMAGFDPRD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PROM4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9211) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.900e-24
Identity = 83/238 (34.87%), Postives = 117/238 (49.16%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI + +      +++S +LV      I  ++  LH  +++  D+  +  K   E ++     L  L GIP  +KDN+ TK  + TT  S  L   V P ++ V  +L +AGAI+LGK +L E++   SS   S F    G   NP+ LS  P              L   +LG++T GSI  P+S   VVGLKPT G  SR G++      D VGP   +V DAA VL  IAG D  D
Sbjct:    2 TIAEWRQRLNNREISSLELVNEQFARIKDVDNKLHAFLKLEEDSARENAKRIDEARLSGK-ELPPLAGIPFAIKDNLCTKG-VKTTCSSKMLESFVPPYESTVTQRLWEAGAILLGKTNLDEFA-MGSSTETSAF----GATSNPWDLSRVPGGSSGGSAAAVASGLCLAALGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQVGPFTTSVEDAAEVLQVIAGKDPLD 232          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CLOCE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.900e-24
Identity = 85/243 (34.98%), Postives = 121/243 (49.79%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            I   TIK+ +      ++++ +L   YL  I+ L+  +   + V  D AL QA++A   + +   G    L GIP+ +KDNI  +    TT  S  L   V P  A  V KL    A+ILGK +L E++    S   S F       KNP+ L+  P             +LA  SLG++T GS+  P+S   VVG+KPT GL SR G++      D +GPI +TV D A +LD+I G D  D
Sbjct:    3 ITRLTIKEARKLLDNREISALELTRTYLDRINTLDGKVESYLSVTEDMALKQAEQA---QNLIDYGKASLLTGIPLSIKDNICIEGT-KTTCASKMLEDFVSPYTATAVDKLFADNAVILGKTNLDEFA-MGGSTENSAFKIT----KNPFDLTRVPGGSSGGSAACVSASLALGSLGSDTGGSVRQPASFCGVVGMKPTYGLVSRYGLVAFASSFDQIGPIAKTVEDCAIILDSICGNDPKD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CHLSY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.900e-24
Identity = 83/249 (33.33%), Postives = 123/249 (49.40%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVS-------LGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +   T+   Q A     +T+ +L E  L  I+   P +   + + PDA   A +A  ER+ +   SL  L GIPI +KD I T D + TTAGS  L G   P +A V+ +L  AGA+++GK +  E++   S++             + Y ++ +P             + AAV+       LGT+T GSI  P++   + GLKPT G  SR G+I      D +GP+  TVAD A +L+ IAG D  D
Sbjct:    4 LHHLTVTAAQAALAAGDITAVELTEACLARINATEPTIRAFLHLTPDAALAAARAADERRQQGR-SLGPLDGIPIAIKDVICT-DGVPTTAGSRILAGFRPPYNATVIERLVAAGAVLVGKLNCDEFAMGSSTE------------NSAYQITTNPWDPTRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYGRVSRYGLIAYGSSLDQIGPMAWTVADLAVLLNVIAGHDPRD 238          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CHLAA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.900e-24
Identity = 83/249 (33.33%), Postives = 123/249 (49.40%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVS-------LGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +   T+   Q A     +T+ +L E  L  I+   P +   + + PDA   A +A  ER+ +   SL  L GIPI +KD I T D + TTAGS  L G   P +A V+ +L  AGA+++GK +  E++   S++             + Y ++ +P             + AAV+       LGT+T GSI  P++   + GLKPT G  SR G+I      D +GP+  TVAD A +L+ IAG D  D
Sbjct:    4 LHHLTVTAAQAALAAGDITAVELTEACLARINATEPTIRAFLHLTPDAALAAARAADERRQQGR-SLGPLDGIPIAIKDVICT-DGVPTTAGSRILAGFRPPYNATVIERLVAAGAVLVGKLNCDEFAMGSSTE------------NSAYQITTNPWDPTRVPGGSSGGSAAAVAAGQVPATLGTDTGGSIRQPAALCGISGLKPTYGRVSRYGLIAYGSSLDQIGPMAWTVADLAVLLNVIAGHDPRD 238          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_PSEE41.114e-2433.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NATTJ1.114e-2432.79Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_PSEPW1.455e-2433.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_CYAP81.455e-2433.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ACIBL1.455e-2435.39Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_RALPJ1.900e-2436.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_PROM41.900e-2434.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_CLOCE1.900e-2434.98Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLSY1.900e-2433.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLAA1.900e-2433.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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