CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURS3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia sp. (strain 383) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.900e-24
Identity = 84/239 (35.15%), Postives = 122/239 (51.05%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     L +  + V+ D  L+QA  AD E    A G+L GL   PI  KD   T+   ++TAGS  L     P DA VV +L+ AG + LGK ++ E++   SS   S F    G  KNP+  +A P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ ++ +D A +L+A+AGFD  D
Sbjct:    5 SLTELRAALAAKECSAVELAQLYLKRIEAARDL-NAFVHVDADLTLAQAKAADAELARGAGGALTGL---PIAHKDVFVTRG-WHSTAGSKMLANYESPFDATVVARLQAAGMVTLGKTNMDEFA-MGSSNENSAF----GAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMAGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ANASK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaeromyxobacter sp. (strain K) GN=gatA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.900e-24
Identity = 86/226 (38.05%), Postives = 113/226 (50.00%), Query Frame = 1
Query:  166 LTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++S +LVE  L  I   +  L   + V+ D    A +A   R   A G  R  L G+P+ +KD   TK  + TTAGS  L G + P DA VV +L  AGA+I+GK ++ E++   SS   S +        NP+ LS  P                  SLGT+T GSI  P++   VVG+KPT G  SR GV+      D VGP+ R V DAA VL  IAG D  D
Sbjct:   25 ISSSELVEASLARIQATDGKLGAFLAVSADRARAAARAADARA--ARGERRSELDGVPVAVKDIFVTKG-VPTTAGSRILEGYLPPYDATVVERLEAAGAVIVGKLNMDEFA-MGSSNENSAYK----PCHNPWDLSRTPGGSSGGSAASVAAGQVHASLGTDTGGSIREPAAFCGVVGVKPTYGRVSRYGVVAFASSLDQVGPLAREVGDAALVLRTIAGHDPRD 242          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_SYNFM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.481e-24
Identity = 84/240 (35.00%), Postives = 126/240 (52.50%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA-LSQADKADY-ERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            T+ +L     + +L+  + +  +L  I  L+P L+  + V  ++ L++A + D  ER + A+     L GIP+ +KD +  +  + TT GS  L   V P D  V+ +LR+AGAI LGK ++ E++   SS   S +    G  +NP+     P             +L + SLGT+T GSI  P+S   VVGLKPT G  SR G++      D +GPI + V DAA +L AIAG D  D
Sbjct:    7 TMHELHDLLVRKELSVTETLTSFLTRIETLDPRLNSYLSVLAESSLAEAGRFDRGERDLHASP----LAGIPLAIKDVLCMQGTV-TTCGSRILENFVPPYDGTVIARLREAGAIFLGKTNMDEFA-MGSSTENSAY----GVTRNPWDRERVPGGSSGGSAAAVAADLCSGSLGTDTGGSIRQPASFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITKDVEDAAILLQAIAGHDRRD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_STRCO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptomyces coelicolor GN=gatA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.481e-24
Identity = 82/243 (33.74%), Postives = 124/243 (51.03%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            I + T  ++       +LT+ Q+ E +L  I  ++  +H  + V+ + AL+QA   D +R+      L  L G+P+ LKD I T + + TT GS  L G + P DA V  +L+ A  +ILGK ++ E++   SS   S +   G    NP+ L+  P               A +++GT+T GSI  P+S    VG+KPT G  SR G++  +   D  GP  RTV DAA + + IAG D  D
Sbjct:    4 IIKLTAAEIAAKIASGELTAVQVTEAHLARIEAVDEKVHAFLHVDREGALAQARAVDEKRE--RGEKLGPLAGVPLALKD-IFTTEGIPTTVGSKILEGWIPPYDATVTKRLKAADVVILGKTNMDEFA-MGSSTENSAYGPTG----NPWDLTKIPGGSGGGSSAALAAFQAPLAIGTDTGGSIRQPASVTGTVGVKPTYGGVSRYGMVAFSSSLDQGGPCARTVLDAALLHEVIAGHDPMD 238          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSEP1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.481e-24
Identity = 81/243 (33.33%), Postives = 116/243 (47.74%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ ++         +S +L    L  I +L+P ++  I +  D AL+QA  AD  R   AAG    L G PI  KD   T   + T+ GS  L     P DA VV KL +AG + LGK ++ E++   +++     S   G  KNP+ L   P              L   + GT+T GSI  P++  ++ GLKPT G  SR G+I      D  GP+ RT  D A +L  +AGFD  D
Sbjct:    1 MHQLTLAEIARGLADKSFSSEELTGALLARIKQLDPQINSFISITDDLALAQARAADARR---AAGETGVLLGAPIAHKDLFCTNG-VRTSCGSKMLDNFKAPYDATVVAKLAEAGMVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALLLQGMAGFDAKD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSEMY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas mendocina (strain ymp) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.481e-24
Identity = 81/243 (33.33%), Postives = 118/243 (48.56%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ ++    +  + ++ +L    L  I +L+P L+  I V  D A+ QA  AD  R   AAG    L G PI  KD   T   + T+ GS  L G   P DA VV KL+ AG + LGK ++ E++   +++     S   G  KNP+  S  P              L   + GT+T GSI  P++  ++ G+KPT G  SR G+I      D  GP+ R   D A +L A+AGFD  D
Sbjct:    1 MHQMTLAEIAKGLEAKQFSAEELSRALLARIAQLDPQLNSFITVTEDLAIEQAKAADARR---AAGENGALLGAPIAHKDLFCTNGVL-TSCGSKILTGFKAPYDATVVEKLKAAGTVTLGKLNMDEFAMGSANE-----SSHYGAVKNPWDTSRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYGRVSRWGMIAYASSLDQGGPLARDAFDCALLLGAMAGFDAKD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ANADE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.481e-24
Identity = 87/226 (38.50%), Postives = 112/226 (49.56%), Query Frame = 1
Query:  166 LTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++S +LVE  L  I   +  L   + V  D    A KA   R   A G  R  L G+P+ +KD   TK  + TTAGS  L G + P DA VV +L  AGA+I+GK ++ E++   SS   S +        NP+ LS  P                  SLGT+T GSI  P++   VVG+KPT G  SR GV+      D VGP+ R V DAA VL  IAG D  D
Sbjct:   25 ISSTELVEASLARIQATDGKLGAFLAVCADRARAAAKAADARA--ARGERRSELDGVPVAVKDLFVTKG-VPTTAGSRILEGYLPPYDATVVERLEAAGAVIVGKLNMDEFA-MGSSNENSAYK----PCHNPWDLSRTPGGSSGGSAASVAAGQVHASLGTDTGGSIREPAAFCGVVGVKPTYGRVSRYGVVAFASSLDQVGPLAREVGDAALVLRTIAGHDPRD 242          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ANAD2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.481e-24
Identity = 86/226 (38.05%), Postives = 113/226 (50.00%), Query Frame = 1
Query:  166 LTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++S +LVE  L  I   +  L   + V+ D    A +A   R   A G  R  L G+P+ +KD   TK  + TTAGS  L G + P DA VV +L  AGA+I+GK ++ E++   SS   S +        NP+ LS  P                  SLGT+T GSI  P++   VVG+KPT G  SR GV+      D VGP+ R V DAA VL  IAG D  D
Sbjct:   25 ISSSELVEASLARIQATDGKLGAFLAVSADRARAAARAADARA--ARGERRSELDGVPVAVKDLFVTKG-VPTTAGSRILEGWLPPYDATVVERLEAAGAVIVGKLNMDEFA-MGSSNENSAYK----PCHNPWDLSRTPGGSSGGSAASVAAGQVHASLGTDTGGSIREPAAFCGVVGVKPTYGRVSRYGVVAFASSLDQVGPLAREVGDAALVLRTIAGHDPRD 242          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_STRAW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptomyces avermitilis GN=gatA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 81/239 (33.89%), Postives = 122/239 (51.05%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            T  ++       +LT+ Q+ E +L  I  ++  +H  + V+ + AL+QA   D +R+      L  L G+P+ LKD I T + + TT GS  L G + P DA +  KL+ A  +ILGK ++ E++   SS   S +   G    NP+ LS  P               A +++GT+T GSI  P++    VG+KPT G  SR G++  +   D  GP  RTV DAA + + IAG D  D
Sbjct:   12 TAAEIAAKVASGELTAVQVTEAHLARIDAVDEKVHAFLHVDREGALAQARAVDEKRE--RGEKLGPLAGVPLALKD-IFTTEGIPTTVGSKILEGWIPPYDATLTKKLKAADVVILGKTNMDEFA-MGSSTENSAYGPTG----NPWDLSRIPGGSGGGSSAALASFEAPLAIGTDTGGSIRQPAAVTGTVGVKPTYGAVSRYGMVAFSSSLDQGGPCARTVLDAALLHEVIAGHDPLD 242          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ROSCS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 83/244 (34.02%), Postives = 121/244 (49.59%), Query Frame = 1
Query:  112 PIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNP-DALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            P+ + T+   +    + +++S +L +  L  I  + P +   + V+   A +QA  AD  R   AAG    L GIP+ +KD I+T+  + TT  S  L       DA  V +L+ AGA+ILGK +  E++   SS   S F     Q +NP+ L   P               A  +LGT+T GSI  P++   + GLKPT G  SR G++      D +GP+ RTV D A VL  IAG D +D
Sbjct:    3 PLYQLTVAQAREMLARGEISSLELTDALLTRIAAVEPKVRAFLVVDAAGARAQARAADARR---AAGDASPLLGIPMGIKDVISTQG-LRTTCASKMLENYTPVYDATAVARLKAAGAVILGKLNCDEFA-MGSSTENSAFQ----QTRNPWNLERVPGGSSGGSAAAVAAGEAPAALGTDTGGSIRQPAALCGITGLKPTYGRVSRYGLVAFASSLDQIGPMARTVRDCAIVLRVIAGADPFD 237          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BURS31.900e-2435.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_ANASK1.900e-2438.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_SYNFM2.481e-2435.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRCO2.481e-2433.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PSEP12.481e-2433.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PSEMY2.481e-2433.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_ANADE2.481e-2438.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ANAD22.481e-2438.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_STRAW3.240e-2433.89Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_ROSCS3.240e-2434.02Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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