CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_DESPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfotalea psychrophila GN=gatA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 81/251 (32.27%), Postives = 124/251 (49.40%), Query Frame = 1
Query:  121 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKA----------PSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            E +I++     +   ++S +L +  L  I  +   + G I V+ + AL+QA  AD   K    G    L GIP+ +KD +A KD +  T GS  L   + P +A +V KL+ AGA+ LGK ++ E++   +S+             G+   G  G +   ++A  C                 S+GT+T GSI  P++   VVG+KPT G  SR G+       D  GP+CRTVAD A V+++I G+D  D
Sbjct:    5 ELSIEEAAAKLRAGDISSVELTQSCLQRIGDVEDRVKGFITVDEEGALAQAKAAD---KALQNGETNPLCGIPMSIKDLLAVKD-LPMTCGSKMLEKFIAPYNATIVDKLQGAGAVNLGKVTMDEFAMGSTSETCAFGVPQNPWKEGYVAGGSSGGSAVTVAAQECFF---------------SIGTDTGGSIRQPAALCGVVGMKPTYGRVSRYGLTAFASSLDQAGPLCRTVADTALVMNSICGYDPMD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURMS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia mallei (strain SAVP1) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 87/241 (36.10%), Postives = 119/241 (49.38%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHR---LNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     LN  +H   E+    L+QA  AD       AG L GL   PI+ KD   T+    +TAGS  L     P DA VV +L  AG + LGK ++ E++   SS   S F    G  KNP+  SA P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ R+ AD A +L+A+AGFD  D
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNAFVHVDAELT---LAQAKAADAALANGEAGPLAGL---PIVHKDVFVTRG-WRSTAGSKMLANYASPFDATVVARLSAAGMVTLGKTNMDEFA-MGSSNENSAF----GPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia mallei GN=gatA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 87/241 (36.10%), Postives = 119/241 (49.38%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHR---LNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     LN  +H   E+    L+QA  AD       AG L GL   PI+ KD   T+    +TAGS  L     P DA VV +L  AG + LGK ++ E++   SS   S F    G  KNP+  SA P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ R+ AD A +L+A+AGFD  D
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNAFVHVDAELT---LAQAKAADAALANGEAGPLAGL---PIVHKDVFVTRG-WRSTAGSKMLANYASPFDATVVARLSAAGMVTLGKTNMDEFA-MGSSNENSAF----GPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURM9 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia mallei (strain NCTC 10229) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 87/241 (36.10%), Postives = 119/241 (49.38%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHR---LNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     LN  +H   E+    L+QA  AD       AG L GL   PI+ KD   T+    +TAGS  L     P DA VV +L  AG + LGK ++ E++   SS   S F    G  KNP+  SA P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ R+ AD A +L+A+AGFD  D
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNAFVHVDAELT---LAQAKAADAALANGEAGPLAGL---PIVHKDVFVTRG-WRSTAGSKMLANYASPFDATVVARLSAAGMVTLGKTNMDEFA-MGSSNENSAF----GPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURM7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia mallei (strain NCTC 10247) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 87/241 (36.10%), Postives = 119/241 (49.38%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHR---LNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     LN  +H   E+    L+QA  AD       AG L GL   PI+ KD   T+    +TAGS  L     P DA VV +L  AG + LGK ++ E++   SS   S F    G  KNP+  SA P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ R+ AD A +L+A+AGFD  D
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNAFVHVDAELT---LAQAKAADAALANGEAGPLAGL---PIVHKDVFVTRG-WRSTAGSKMLANYASPFDATVVARLSAAGMVTLGKTNMDEFA-MGSSNENSAF----GPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.240e-24
Identity = 84/239 (35.15%), Postives = 120/239 (50.21%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     L +  + V P+  L+QA  AD E    A G L GL   PI  KD   T+    +TAGS  L     P DA VV +L+ AG + LGK ++ E++   SS   S F    G  KNP+  +A P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ ++ +D A +L+A+AGFD  D
Sbjct:    5 SLTELRAALAAKECSAVELAQHYLKRIDAARDL-NAFVHVEPELTLAQAKAADAELARGAGGPLTGL---PIAHKDVFVTRG-WRSTAGSKMLANYESPFDATVVARLQAAGMVTLGKTNMDEFA-MGSSNENSAF----GAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMAGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PROMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus GN=gatA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.232e-24
Identity = 82/230 (35.65%), Postives = 118/230 (51.30%), Query Frame = 1
Query:  157 QNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGS-LRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + +++S +L+   +  I  +   LH  + +N + A + A K D   + +AAG  L  L G+P  +KDN+ TK  + TT  S  L   + P ++ V  +L KAG I+LGK +L E++   SS   S F    G  KNP+ ++  P              L   +LG++T GSI  P+S   VVGLKPT G  SR G+I      D VGP    V+DAA +L  IAG D  D
Sbjct:   12 KGEVSSLELINQQINRIEEVENTLHSYLYLNHEKARASAIKID---EARAAGEELPPLAGVPFAIKDNLCTKG-IPTTCSSKMLEEFIPPYESTVTQRLWKAGGILLGKTNLDEFA-MGSSTETSAF----GPTKNPWDITRVPGGSSGGSAAAVASGLCTAALGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLIAFASSLDQVGPFSTNVSDAAEILQVIAGHDPRD 232          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_METBF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.232e-24
Identity = 82/233 (35.19%), Postives = 117/233 (50.21%), Query Frame = 1
Query:  142 QLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            Q+  K  + ++ ++   YL  I +    ++G I V+  AL QA K D E      G    L G+PI +KDNI+     N+  GS  L   + P +A V+ KL  AGA+ILGK ++ E++   SS   S F    G   NP+ L   P               A  +LG++T GS+ CP++   VVGLKPT G  SR GV+      + VGP+   V D A ++D IAG+D  D
Sbjct:    9 QVKEKIKESSAEEVTAQYLDTIGKSK--VNGYITVSEKALEQAKKIDVE------GHNGPLAGVPIAIKDNISVVGLPNS-CGSKILEDYIPPFNAYVIEKLLAAGAVILGKTNMDEFA-MGSSTETSYF----GPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPAAFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVTDIAVLMDVIAGYDRKD 227          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_EUBE2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.232e-24
Identity = 82/241 (34.02%), Postives = 124/241 (51.45%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPR-DAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            T  +L    K  + T+ + +E  + +I +    L+  +  + + AL+ A KAD + K   AG L G L G+P  +KDN+ T+  + T +    +LG+ VP   A  V +L+ AGA+I+GK ++ E++   S+   S F    G  KNP      P             N    +LG++T GSI  P+S   VVGLKPT G  SR G+I      D +GP+C+ V D A +++AIAG D  D
Sbjct:    7 TAVELAAKIKAGETTATEAMEAVIAQIEKSEDELNCYVTFDKEKALAAAKKADEDIK---AGKLTGPLAGVPFAIKDNMCTEGMLTTCSSK--ILGNFVPTYTADAVERLQNAGAVIIGKTNMDEFA-MGSTTETSAF----GATKNPRNPEHVPGGSSGGSAAAVAANECFAALGSDTGGSIRQPASYCGVVGLKPTYGTVSRYGLIAYGSSLDQIGPLCKDVTDCATIMEAIAGKDDKD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_DECAR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dechloromonas aromatica (strain RCB) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.232e-24
Identity = 81/240 (33.75%), Postives = 123/240 (51.25%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLR-KAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A++K+L LA    K++S +L   +L  I RLNP L+  + V+ +   Q  + D + ++ AAG+   L GIPI  KD    +  ++T  GS  L   V P DA V+ K+  +AG + LGK ++ E++   SS   S F    G  +NP+     P              LA  + GT+T GSI  P++  ++ GLKPT G+ SR G+I      D  GP+  +  D A +L+ + GFD  D
Sbjct:    4 ASLKELSLALAAKKVSSVELSSLFLDRIERLNPTLNAFVTVDREKSLQMAR-DADARI-AAGTAGPLTGIPIAQKDIFCAEGWLST-CGSKMLANFVSPYDATVIRKMHAEAGLVSLGKTNMDEFA-MGSSNETSFF----GSVRNPWDTQRVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPAALCNLTGLKPTYGVVSRYGMIAFASSLDQGGPMAASAEDCALLLNTMVGFDERD 235          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_DESPS3.240e-2432.27Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_BURMS3.240e-2436.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURMA3.240e-2436.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURM93.240e-2436.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURM73.240e-2436.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURM13.240e-2435.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_PROMA4.232e-2435.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_METBF4.232e-2435.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_EUBE24.232e-2434.02Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_DECAR4.232e-2433.75Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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