CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURCJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.232e-24
Identity = 84/239 (35.15%), Postives = 121/239 (50.63%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     L +  + V+ D  L+QA  AD E    A G+L GL   PI  KD   T+    +TAGS  L     P DA VV +L+ AG + LGK ++ E++   SS   S F    G  KNP+  +A P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ ++ +D A +L+A+AGFD  D
Sbjct:    5 SLTELRAALAAKECSAVELAQHYLKRIDAARDL-NAFVHVDADLTLAQAKAADAELARGAGGALTGL---PIAHKDVFVTRG-WRSTAGSKMLANYESPFDATVVARLQAAGMVTLGKTNMDEFA-MGSSNENSAF----GAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMAGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURCH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia cenocepacia (strain HI2424) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.232e-24
Identity = 84/239 (35.15%), Postives = 121/239 (50.63%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     L +  + V+ D  L+QA  AD E    A G+L GL   PI  KD   T+    +TAGS  L     P DA VV +L+ AG + LGK ++ E++   SS   S F    G  KNP+  +A P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ ++ +D A +L+A+AGFD  D
Sbjct:    5 SLTELRAALAAKECSAVELAQHYLKRIDAARDL-NAFVHVDADLTLAQAKAADAELARGAGGALTGL---PIAHKDVFVTRG-WRSTAGSKMLANYESPFDATVVARLQAAGMVTLGKTNMDEFA-MGSSNENSAF----GAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMAGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURCC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia cenocepacia (strain MC0-3) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.232e-24
Identity = 84/239 (35.15%), Postives = 121/239 (50.63%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     L +  + V+ D  L+QA  AD E    A G+L GL   PI  KD   T+    +TAGS  L     P DA VV +L+ AG + LGK ++ E++   SS   S F    G  KNP+  +A P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ ++ +D A +L+A+AGFD  D
Sbjct:    5 SLTELRAALAAKECSAVELAQHYLKRIDAARDL-NAFVHVDADLTLAQAKAADAELARGAGGALTGL---PIAHKDVFVTRG-WRSTAGSKMLANYESPFDATVVARLQAAGMVTLGKTNMDEFA-MGSSNENSAF----GAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMAGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURCA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia cenocepacia (strain AU 1054) GN=gatA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.232e-24
Identity = 84/239 (35.15%), Postives = 121/239 (50.63%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     L +  + V+ D  L+QA  AD E    A G+L GL   PI  KD   T+    +TAGS  L     P DA VV +L+ AG + LGK ++ E++   SS   S F    G  KNP+  +A P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ ++ +D A +L+A+AGFD  D
Sbjct:    5 SLTELRAALAAKECSAVELAQHYLKRIDAARDL-NAFVHVDADLTLAQAKAADAELARGAGGALTGL---PIAHKDVFVTRG-WRSTAGSKMLANYESPFDATVVARLQAAGMVTLGKTNMDEFA-MGSSNENSAF----GAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMAGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_DESAD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.527e-24
Identity = 82/243 (33.74%), Postives = 126/243 (51.85%), Query Frame = 1
Query:  121 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEV-NPDALSQADKADYERKVKAAG--SLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            E ++ ++       ++T+ + V+  L +I +  P    ++ + N +AL QA++ D      AAG  + + L G+P+++KD +AT   + TTAGS  L G     D+  V KL++AGAII+GKA++ E++   S+   S +        NP+  S  P                  +LGT+T GSI  P+S    VG+KPT G  SR G+I      D +GP+ RTV DAA VL+ I G D  D
Sbjct:    6 EKSLTEIHAMLMTKEVTATEAVKACLEQIAKSEPETKALLHICNDEALKQAEEMD------AAGPDASKPLWGVPVVIKDALATNG-IPTTAGSKILEGFTPFYDSTAVAKLKEAGAIIVGKANMDEFA-MGSTTENSAYQTT----TNPWDASRVPGGSSGGSGATVAAGQCYAALGTDTGGSIRLPASFCGCVGVKPTYGRVSRYGMIAYGSSLDQIGPMTRTVEDAARVLNVIGGHDQRD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CLOBL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.527e-24
Identity = 82/246 (33.33%), Postives = 125/246 (50.81%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPAT 849
            + + T  +L+      ++ + ++ + +L  I+ ++  L   + V+ + A+ +A + D   K++    L+ L GIP+ +KDNI  K   NT A S  L G   P DA V  K+++   IILGK ++ E++   SS   S F       KNP+ L   P             + A +SLGT+T GS+  P+S   VVGLKPT G  SR+GV+      D VGP+ + V D A +  AIAG D  D  T
Sbjct:    3 LTKLTAHELKDMLSNKEVKAEEITKAFLDRINLVDNKLGAYLYVSEEEAIKKAKEIDV--KIEKNEELKALSGIPVGIKDNINVKGMQNTCA-SKILEGYTSPYDAHVTEKIKQEEGIILGKLNMDEFA-MGSSTENSAFK----LAKNPWDLERVPGGSSGGSAVAVAGSEATLSLGTDTGGSVRQPASFCGVVGLKPTYGRISRSGVVAFGSTLDQVGPMGKDVEDCALLTSAIAGLDKKDFTT 240          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei GN=gatA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.527e-24
Identity = 87/241 (36.10%), Postives = 118/241 (48.96%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHR---LNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     LN  +H   E+    L+QA  AD       AG L GL   PI  KD   T+    +TAGS  L     P DA VV +L  AG + LGK ++ E++   SS   S F    G  KNP+  SA P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ R+ AD A +L+A+AGFD  D
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNAFVHVDAELT---LAQAKAADAALANGEAGPLAGL---PIAHKDVFVTRG-WRSTAGSKMLANYASPFDATVVARLSAAGMVTLGKTNMDEFA-MGSSNENSAF----GPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURP6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 668) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.527e-24
Identity = 87/241 (36.10%), Postives = 118/241 (48.96%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHR---LNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     LN  +H   E+    L+QA  AD       AG L GL   PI  KD   T+    +TAGS  L     P DA VV +L  AG + LGK ++ E++   SS   S F    G  KNP+  SA P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ R+ AD A +L+A+AGFD  D
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNAFVHVDAELT---LAQAKAADAALANGEAGPLAGL---PIAHKDVFVTRG-WRSTAGSKMLANYASPFDATVVARLSAAGMVTLGKTNMDEFA-MGSSNENSAF----GPVKNPWDTSAVPGGSSGGSSAAVAAGLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURP1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 1710b) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.527e-24
Identity = 87/241 (36.10%), Postives = 118/241 (48.96%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHR---LNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     LN  +H   E+    L+QA  AD       AG L GL   PI  KD   T+    +TAGS  L     P DA VV +L  AG + LGK ++ E++   SS   S F    G  KNP+  SA P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ R+ AD A +L+A+AGFD  D
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNAFVHVDAELT---LAQAKAADAALANGEAGPLAGL---PIAHKDVFVTRG-WRSTAGSKMLANYASPFDATVVARLSAAGMVTLGKTNMDEFA-MGSSNENSAF----GPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURP0 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia pseudomallei (strain 1106a) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.527e-24
Identity = 87/241 (36.10%), Postives = 118/241 (48.96%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHR---LNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     LN  +H   E+    L+QA  AD       AG L GL   PI  KD   T+    +TAGS  L     P DA VV +L  AG + LGK ++ E++   SS   S F    G  KNP+  SA P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ R+ AD A +L+A+AGFD  D
Sbjct:    5 SLTELRAALDAKECSAVELAQHYLKRIDAARDLNAFVHVDAELT---LAQAKAADAALANGEAGPLAGL---PIAHKDVFVTRG-WRSTAGSKMLANYASPFDATVVARLSAAGMVTLGKTNMDEFA-MGSSNENSAF----GPVKNPWDTSAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCALLLNAMAGFDERD 233          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BURCJ4.232e-2435.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURCH4.232e-2435.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURCC4.232e-2435.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURCA4.232e-2435.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_DESAD5.527e-2433.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_CLOBL5.527e-2433.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BURPS5.527e-2436.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURP65.527e-2436.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURP15.527e-2436.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURP05.527e-2436.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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