CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSEF5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.219e-24
Identity = 82/239 (34.31%), Postives = 115/239 (48.12%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            T+ ++       K +S +L +  L  I +L+P ++  I +  D ALSQA  AD  R   A G    L G PI  KD   T+  + T+ GS  L     P DA VV KL  AGA+ LGK ++ E++   +++     S   G  KNP+ L   P              L   +  T+T GSI  P++  ++ GLKPT G  SR G+I      D  GP+ RT  D A +L  +AGFD  D
Sbjct:    5 TLAEIARGLADKKFSSVELTQTLLARIAQLDPQINSFISLTQDLALSQAKAADERR---ANGESGALLGAPIAHKDLFCTQG-IRTSCGSKMLDNFKAPYDATVVAKLAAAGAVTLGKTNMDEFAMGSANE-----SSWYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPAATATDTGGSIRQPAAFTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCAILLQGMAGFDPND 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_METI4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylacidiphilum infernorum (isolate V4) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.219e-24
Identity = 80/240 (33.33%), Postives = 126/240 (52.50%), Query Frame = 1
Query:  121 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            E ++K+L+    Q +++  ++VE  L  I  ++P +   I +N +   +A K       KA  SL  L G+P+ +KDNI    +    A S  L G + P D+ V+ KL+KAGAI+LG+ ++ E++   S++  S      G  +NP+     P             + A  +LG++T GSI  P++    VGLKPT G  SR G+       D +GPI +TV DAA +L+ I+GFD +D
Sbjct:    5 ELSVKELRRLLVQKEVSPLEVVENLLCRIAEVDPKIFAYIYLNHERALEASK-------KADISLP-LGGVPVAIKDNINVLGEPCRCA-SRILEGYLAPYDSTVIEKLKKAGAILLGRTNMDEFAMGSSTENSSV-----GITRNPWNTERVPGGSSGGSAAAVAAHEAFCALGSDTGGSIRQPAAFCGCVGLKPTYGRVSRYGLTAFASSLDQIGPITKTVEDAALLLEVISGFDPFD 230          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CLOBJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Kyoto / Type A2) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.219e-24
Identity = 82/246 (33.33%), Postives = 123/246 (50.00%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPAT 849
            + + T  +L+      ++ + ++   +L  I+ ++  L   + V+ + A+ +A + D   K++    L+ L GIP+ +KDNI  K   NT A S  L G   P DA V  K++K   IILGK ++ E++   SS   S F       KNP+ L   P               A +SLGT+T GS+  P+S   +VGLKPT G  SR+GV+      D VGP+ + V D A +  AIAG D  D  T
Sbjct:    3 LTKLTAHELKDILSNKEVKAEEITRAFLDRINLVDNKLGAYLYVSEEEAIKKAKEIDV--KIEKNEELKALSGIPVGIKDNINVKGMQNTCA-SKILQGYTSPYDAHVTEKIKKEEGIILGKLNMDEFA-MGSSTENSAFK----LAKNPWDLERVPGGSSGGSAVAVAGCEATLSLGTDTGGSVRQPASFCGIVGLKPTYGRISRSGVVAFGSTLDQVGPMGKDVEDCALLTSAIAGLDKKDFTT 240          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURCM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.219e-24
Identity = 83/239 (34.73%), Postives = 121/239 (50.63%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     L +  + V+ D  L+QA  AD E    A G+L GL   PI  KD   T+    +TAGS  L     P DA VV +L+ AG + LGK ++ E++   SS   S F    G  KNP+  +A P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ ++ +D A +L+A++GFD  D
Sbjct:    5 SLTELRAALAAKECSAVELAQLYLKRIDAARDL-NAFVHVDADLTLAQAKAADAELARGAGGALTGL---PIAHKDVFVTRG-WRSTAGSKMLANYESPFDATVVARLQAAGMVTLGKTNMDEFA-MGSSNENSAF----GAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMSGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURA4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia ambifaria (strain MC40-6) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.219e-24
Identity = 83/239 (34.73%), Postives = 121/239 (50.63%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +L+ A    + ++ +L + YL  I     L +  + V+ D  L+QA  AD E    A G+L GL   PI  KD   T+    +TAGS  L     P DA VV +L+ AG + LGK ++ E++   SS   S F    G  KNP+  +A P              LA  + GT+T GSI  P+S   V G+KPT G  SR G+I      D  GP+ ++ +D A +L+A++GFD  D
Sbjct:    5 SLTELRAALAAKECSAVELAQLYLKRIDAARDL-NAFVHVDADLTLAQAKAADAELARGAGGALTGL---PIAHKDVFVTRG-WRSTAGSKMLANYESPFDATVVARLQAAGMVTLGKTNMDEFA-MGSSNENSAF----GAVKNPWDTNAVPGGSSGGSSAAVAARLAPAATGTDTGGSIRQPASFAGVTGIKPTYGRVSRYGMIAFASSLDQGGPMAQSASDCALLLNAMSGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ARTAT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Arthrobacter aurescens (strain TC1) GN=gatA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.219e-24
Identity = 84/238 (35.29%), Postives = 120/238 (50.42%), Query Frame = 1
Query:  136 DLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKV--KAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            DL       ++T+ ++ + +L  I  ++  ++  + VN + AL+ A + D  R     AA  L  L G+PI +KD I T  +  TTAGS  L G   P DA VV KLR A   ILGK +L E++   SS   S +    G  +NP+ L   P               A ++LGT+T GSI  P +    VG+KPT G  SR G I +    D +GP+ RTV D+A + + I G D +D
Sbjct:   15 DLAAKLASREVTAVEVTQAHLDRIADVDGQVNAFLHVNSEEALAVAAEVDAARAAGGSAAEELHALAGVPIAVKDLIVTIGQP-TTAGSKILEGWHSPYDATVVKKLRAAKMPILGKTNLDEFA-MGSSTEHSAY----GPTRNPWDLDRIPGGSGGGSAAAVAAFEAPLALGTDTGGSIRQPGAVTGTVGVKPTYGAVSRYGAIAMASSLDQIGPVSRTVLDSALLQEVIGGHDPFD 246          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PROAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Propionibacterium acnes GN=gatA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.428e-24
Identity = 82/242 (33.88%), Postives = 120/242 (49.59%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVN-PDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPAT 849
            T  +L       +++S ++ + +L  I  ++  +H  + V+   AL  A + D   ++     L  L G+P+ +KD   TK  + TTA S  L G + P D+ +V + + AG +ILGK +L E++   SS   S F    G   NP+ L   P               A ++LGT+T GSI  P +    VG+KPT G TSR GVI +    D+ GP  RTV DAA +  AIAG D  D  T
Sbjct:    8 TAAELGERIAARQISSEEVTQAHLDRISEVDGDIHAFLLVDHAGALDAARRID--ARIADGEHLGPLAGVPLAVKDLFCTKG-IATTASSQMLEGWIPPYDSTIVTRCKDAGMVILGKTNLDEFA-MGSSTETSAF----GPTHNPWDLERVPGGSGGGSAASLASFQAPLALGTDTGGSIRQPGAVTGTVGIKPTYGSTSRYGVIAMASSLDTPGPCARTVLDAALLHQAIAGHDAMDQTT 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_MORCA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Moraxella catarrhalis GN=gatA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.428e-24
Identity = 80/243 (32.92%), Postives = 121/243 (49.79%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +   ++ +L    K  + +S +LVE +   I+RL+  ++  I  + D AL+QA  AD   K++A G  R L G+P+  KDN+ TK  + TTAGS  L   V P DA VV  +  +G + LGK ++ E++   S    S F    G   NP+ +   P                 V+ G++T GSI  P+S   + G+KPT G  SR G+I      D  G   ++  D AY+L  +AG+D  D
Sbjct:    4 LHHLSVHELADGLKNKQFSSHELVEHFANRINRLDGQINSFITKDFDNALAQAKLAD---KLRAKGDNRPLLGVPMAHKDNLCTKGVL-TTAGSKMLYNFVSPYDATVVDSIANSGFVSLGKLNMDEFA-MGSDNESSYF----GAVHNPWDVQRVPGGSSGGSAAAVAAGFVPVATGSDTGGSIRQPASFCGITGIKPTYGRVSRYGMIAYASSLDQAGTFGKSALDCAYLLAPMAGYDPKD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_LEGPC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Corby) GN=gatA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.428e-24
Identity = 80/239 (33.47%), Postives = 118/239 (49.37%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++  L  A    + +S +L +  + +I   N  L+  I ++ D AL +A  AD   K    G  + L GIP+ LKD   TK ++NTT  S  L     P DA +V K ++ GAII+GK ++ E++   SS   S F    G  KNP+     P             NL   ++G++T GSI  P++   + G+KPT GL SR G++      D  GP  ++  D A +L  IAGFD  D
Sbjct:    5 SLAQLSKALHNREFSSVELTQHCINKIQS-NKDLNAFISLDEDQALKEAQSADLVLK---NGEGKPLTGIPMALKDLFCTK-RLNTTCASKMLANFQAPYDATIVTKFKQNGAIIIGKTNMDEFA-MGSSNENSYF----GSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAGFDSKD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_LEGPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Paris) GN=gatA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.428e-24
Identity = 80/239 (33.47%), Postives = 118/239 (49.37%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++  L  A    + +S +L +  + +I   N  L+  I ++ D AL +A  AD   K    G  + L GIP+ LKD   TK ++NTT  S  L     P DA +V K ++ GAII+GK ++ E++   SS   S F    G  KNP+     P             NL   ++G++T GSI  P++   + G+KPT GL SR G++      D  GP  ++  D A +L  IAGFD  D
Sbjct:    5 SLAQLSKALHNREFSSVELTQHCINKIQS-NKDLNAFISLDEDQALKEAQSADLVLK---NGEGKPLTGIPMALKDLFCTK-RLNTTCASKMLANFQAPYDATIVTKFKQNGAIIIGKTNMDEFA-MGSSNENSYF----GSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAGFDSKD 233          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_PSEF57.219e-2434.31Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_METI47.219e-2433.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CLOBJ7.219e-2433.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BURCM7.219e-2434.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BURA47.219e-2434.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_ARTAT7.219e-2435.29Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_PROAC9.428e-2433.88Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_MORCA9.428e-2432.92Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_LEGPC9.428e-2433.47Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_LEGPA9.428e-2433.47Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
back to top