CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_COXBN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain Dugway 5J108-111) GN=gatA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.271e-28
Identity = 88/243 (36.21%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + TI +L+   +   ++S +L + +L  I  +NP L+  I +  + AL+QA  AD      A G    L GIPI  KD   TKD + T+ GS  L   + P DA VV +L KAGAI++GK ++ E++   SS   S F    G  KNP+ L   P              L   + GT+T GSI  P++   + GLKPT G  SR G+I      D  GP+ +T  DAA +L+A+AG D  D
Sbjct:    1 MHQKTIAELKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARL---AKGEATSLTGIPIAQKDIFCTKD-IKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFA-MGSSNENSYF----GAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAGPMAQTAEDAALLLNALAGHDAKD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_COXB2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain CbuG_Q212) GN=gatA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.271e-28
Identity = 88/243 (36.21%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + TI +L+   +   ++S +L + +L  I  +NP L+  I +  + AL+QA  AD      A G    L GIPI  KD   TKD + T+ GS  L   + P DA VV +L KAGAI++GK ++ E++   SS   S F    G  KNP+ L   P              L   + GT+T GSI  P++   + GLKPT G  SR G+I      D  GP+ +T  DAA +L+A+AG D  D
Sbjct:    1 MHQKTIAELKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARL---AKGEATSLTGIPIAQKDIFCTKD-IKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFA-MGSSNENSYF----GAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAGPMAQTAEDAALLLNALAGHDAKD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_COXB1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Coxiella burnetii (strain CbuK_Q154) GN=gatA PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.271e-28
Identity = 88/243 (36.21%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + TI +L+   +   ++S +L + +L  I  +NP L+  I +  + AL+QA  AD      A G    L GIPI  KD   TKD + T+ GS  L   + P DA VV +L KAGAI++GK ++ E++   SS   S F    G  KNP+ L   P              L   + GT+T GSI  P++   + GLKPT G  SR G+I      D  GP+ +T  DAA +L+A+AG D  D
Sbjct:    1 MHQKTIAELKQDLRDKTISSVELTQHFLDRIKTINPTLNSFISITEEYALTQAKAADARL---AKGEATSLTGIPIAQKDIFCTKD-IKTSCGSKMLDNFIAPYDATVVEQLNKAGAILIGKTNMDEFA-MGSSNENSYF----GAVKNPWDLERVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQAGPMAQTAEDAALLLNALAGHDAKD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_GEOSM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter sp. (strain M21) GN=gatA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.660e-28
Identity = 92/243 (37.86%), Postives = 126/243 (51.85%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            I + TI +L    K  +++S +     L  I  ++  ++  I V P+ AL QA  AD  R++ AAG +  L G+P+ LKD   TK  + TT GS  L   V P D   V KL++ GA+I+GK +  E++   SS   S F    G  +NP+ LS  P               A  +LGT+T GSI  P+S    VGLKPT G  SR GVI      D VGP+ R V D+A +L A+AG+D  D
Sbjct:    3 IFDLTIHELHEKLKAKEVSSVEATRAMLDRIEAVDSQVNAYITVTPEQALVQAQDAD--RRI-AAGEIAPLTGVPVGLKDIFVTKG-IRTTCGSRILENFVPPYDGTAVAKLKEQGAVIVGKLNQDEFA-MGSSNESSYF----GPCRNPWDLSCTPGGSSGGSAAAIAARTATATLGTDTGGSIRQPASHCGCVGLKPTYGRVSRYGVIAYASSLDQVGPLTRDVTDSALLLGAVAGYDPMD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ACAM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acaryochloris marina (strain MBIC 11017) GN=gatA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.169e-28
Identity = 90/241 (37.34%), Postives = 130/241 (53.94%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGL-HGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A+I+ L       + +++++ E  L  IH+L P LH  + +  D AL+QA + D +    AAG   GL  GIPI +KDN+ TK  + TT GS  L   + P ++ V  KL  AGA+++GK +L E++   SS   S +   G    NP+ +S  P             +   VS+G++T GSI  P++   VVGLKPT GL SR G++      D +GP  RTV DAA +L  IAG+D  D
Sbjct:    2 ASIQALHQELITKERSAQEITEAALETIHQLEPKLHSFLAITADQALAQAKQVDAQL---AAGEEIGLLAGIPIGIKDNMCTKG-IATTCGSKILQNFIPPYESTVTQKLAAAGAVMVGKTNLDEFA-MGSSTENSAYQVTG----NPWDVSRVPGGSSGGSAAAVAADECVVSIGSDTGGSIRQPAALCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFGRTVEDAAILLQEIAGYDPQD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_THEPX (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter sp. (strain X514) GN=gatA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.699e-28
Identity = 87/239 (36.40%), Postives = 130/239 (54.39%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI +L+   K+ ++++ ++ + YL  I  + P +  ++ +  D AL +A +AD   K+K  G    L GIP+++KDNI+T+  + TT  S  L   + P +A VV KL + G IILGK++L E++   SS   S F       KNP+ LS  P             + AA +LG++T GSI  P+S   VVG+KPT GL SR G++      D +GP  + V D A VL+ I G D  D
Sbjct:    7 TIHELRELLKKREVSALEVTKSYLERIKEVEPKIDALVTITEDFALQKAKEAD--EKIKK-GEDTALTGIPVIIKDNISTEG-IKTTCSSKMLENYIPPYNATVVEKLLEEGVIILGKSNLDEFA-MGSSTENSAFKTT----KNPWDLSRVPGGSSGGSAAAIAADEAAFALGSDTGGSIRQPASLCGVVGMKPTYGLVSRYGLVAFASSLDQIGPFTKDVTDCAIVLNTIIGHDPKD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_THEP3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gatA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.699e-28
Identity = 88/239 (36.82%), Postives = 130/239 (54.39%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI +L+   K+ ++++ ++ + YL  I  + P +  +I +  D AL +A +AD   K+K  G    L GIP+++KDNI+T+  + TT  S  L   + P +A VV KL + G IILGK++L E++   SS   S F       KNP+ LS  P             + AA +LG++T GSI  P+S   VVG+KPT GL SR G++      D +GP  + V D A VL+ I G D  D
Sbjct:    7 TIHELRELLKKREVSALEVTKSYLERIKEVEPKIDALITITEDFALQRAKEAD--EKIKN-GEDTALTGIPVIIKDNISTEG-IKTTCSSKMLENYIPPYNATVVEKLLEEGVIILGKSNLDEFA-MGSSTENSAFKTT----KNPWDLSRVPGGSSGGSAAAIAADEAAFALGSDTGGSIRQPASLCGVVGMKPTYGLVSRYGLVAFASSLDQIGPFTKDVTDCAIVLNTIIGHDPKD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_DEHE1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides ethenogenes (strain 195) GN=gatA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.699e-28
Identity = 87/239 (36.40%), Postives = 126/239 (52.72%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI       K+ KL+S +L   +L  I +L P +   + V P+ AL+QA  AD   K    G +R L GIP+ LKD + TK  + TT  S  L   V P +A VV KL + GA++LGK ++ E++   S++  + F+       NP+  +  P             + A  SLG++T GSI  P+S  SV GLKP+ G+ SR G++      D +GP  + V D A V++AIAGFD  D
Sbjct:    8 TIAQSHKLLKERKLSSAELTRAHLDRIEKLEPEIKAFMTVCPESALAQAKAADEAIK---QGHIRPLTGIPMALKDVLCTKG-IRTTCSSRMLENFVPPYNAHVVDKLAEEGAVLLGKTNMDEFAMGSSTENSAFFTTH-----NPWNTAKVPGGSSGGSAACVAASEAVFSLGSDTGGSIRQPASFCSVTGLKPSYGMVSRYGLVAFASSLDQIGPFTKDVLDCALVMNAIAGFDDRD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_SYMTH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Symbiobacterium thermophilum GN=gatA PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.831e-28
Identity = 91/240 (37.92%), Postives = 122/240 (50.83%), Query Frame = 1
Query:  139 LQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRA 855
            L   F   +L++ ++ E  L  I ++ P +   I V  D  + +A K D  RK      L  L G+PI +KDNI T   M TT  S  L G V P DA VV +LR AGA+I+GKA++ E++        SG S   G  +NP+ L   P               A ++LGT+T GSI  P++   +VGLKPT G  SR GV+      D VGP+ R V D A + + IAG D  D AT A
Sbjct:    7 LNRLFLAGELSAVEIAESALSRIAQVEPAVGAFITVAADHVIERAKKLDARRKAGDT-ELGPLAGVPIAVKDNICTSG-METTCASRILKGYVSPFDATVVERLRAAGAMIIGKANMDEFA-----MGSSGESSAFGVTRNPWDLERVPGGSSSGSAAAVAAGEAPLALGTDTGGSIRQPAAFTGIVGLKPTYGYVSRYGVVAFASSLDQVGPMGRDVEDVARLFEVIAGPDRRD-ATNA 238          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA2_CLOAB (Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS=Clostridium acetobutylicum GN=gatA2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.831e-28
Identity = 88/243 (36.21%), Postives = 126/243 (51.85%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            I + T++ L+ A     L S  +V+ Y   I R  P ++  I +  D AL +A   D ++K+     +  L GIPI +KDNI T D + TT  S  L   V P DA V+ KL+   AII+GK ++ E++   SS   S F       KNP  ++  P              +A +SLG++T GSI  P++   VVGLKPT GL SR G+I      D +GP+ +TV D A +L+ I+G D  D
Sbjct:    3 ILDMTVEQLRNAILDKHLKSEDIVKAYFDNIKRNEPEINAYITLCEDYALKEAK--DVDKKIANGDKVGRLAGIPIAIKDNICT-DGIKTTCASKMLYDFVPPYDATVIKKLKAEDAIIIGKVNMDEFA-MGSSTENSAFKIT----KNPRDITRVPGGSSGGSAAVVAAKMAPISLGSDTGGSIRQPAAFCGVVGLKPTYGLVSRFGLIAFASSLDQIGPLGKTVKDCAELLEVISGEDELD 237          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_COXBN1.271e-2836.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_COXB21.271e-2836.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_COXB11.271e-2836.21Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_GEOSM1.660e-2837.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_ACAM12.169e-2837.34Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_THEPX3.699e-2836.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_THEP33.699e-2836.82Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_DEHE13.699e-2836.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_SYMTH4.831e-2837.92Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA2_CLOAB4.831e-2836.21Glutamyl-tRNA(Gln) amidotransferase subunit A 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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