CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BDEBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bdellovibrio bacteriovorus GN=gatA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.406e-27
Identity = 77/242 (31.82%), Postives = 124/242 (51.24%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPAT 849
            A++ ++  A     ++++++   +L  I  LNP L+    +NP A+ +A+  D   ++     +  L G+P  +K+   TK  + TTAGS  L   V P DA  V +L+K+G +++GK +  E++   S++     +   G  KNP+ L   P              L A +LGT+T GSI  P+S   +VG+KPT G  SR G++      D  GP+  +V DAA  L+ I+GFD  D  T
Sbjct:    6 ASLSEISEAVNNRSISAKEVTLHFLKRIENLNPKLNAFTSLNPQAVQEAEAVD--ARIANGEDVGLLAGVPFGIKEMFCTKG-LTTTAGSKILENFVPPYDATAVARLKKSGIVVMGKLNQDEFAMGSSNE-----TSFHGVVKNPWDLERVPGGSSGGSAAAQASRLVAGTLGTDTGGSIRQPASFCGIVGVKPTYGRVSRYGIVAYASSLDQAGPMVSSVRDAALTLEVISGFDPQDSTT 239          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_THETN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter tengcongensis GN=gatA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.836e-27
Identity = 83/239 (34.73%), Postives = 129/239 (53.97%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            T+ +L+    + +++++++ + YL  I  + P +  ++ +  + AL +A  AD   K    G  + L GIP+++KDNI+T+  + TT  S  L   + P +A VV +L   G +ILGK++L E++   SS   S F       KNP+ LS  P             + AA +LG++T GSI  P+S   VVG+KPT GL SR G++      D +GP  + V D A VL+AIAG D  D
Sbjct:    7 TVHELKELLHKREVSAQEVTKSYLERIKEVEPKIDALVTITEEFALERAKVADEMIK---NGEAKDLTGIPVIIKDNISTEG-IRTTCSSKMLENYIPPYNATVVERLLNEGVVILGKSNLDEFA-MGSSTENSAFKTT----KNPWDLSRVPGGSSGGSAAAVAADEAAFALGSDTGGSIRQPASLCGVVGMKPTYGLVSRYGLVAFASSLDQIGPFTKDVTDCAIVLNAIAGHDPMD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_SYNAS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Syntrophus aciditrophicus (strain SB) GN=gatA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.398e-27
Identity = 84/242 (34.71%), Postives = 124/242 (51.24%), Query Frame = 1
Query:  121 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEV-NPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPS-GFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + TI +LQ   +Q  +TS  +V    G I  +   +H  I +    AL +A KAD + +    G +  L GIP+ LKD   T+  + TT GS  L   + P DA VVVKLR+AGA+  GK ++ E++   S++    GF+      +NP+ L   P             +    +LG++T GSI  P++   VVG+KPT G  SR G+I      D +GP  + V D A +L+ IAG+D  D
Sbjct:    5 QLTIHELQNKIRQGGVTSTAIVNSVFGRIDAVEENVHSYITLMRESALEEAQKADEQIRT---GEINALTGIPVALKDIYCTRG-VRTTCGSLILDNFIPPYDATVVVKLREAGAVFTGKTNMDEFAMGSSTETSYYGFT------RNPWDLERIPGGSSGGSAAAVAADECIAALGSDTGGSIRQPAALCGVVGMKPTYGRVSRFGLIAFASSLDQIGPFTKDVEDCAILLNVIAGYDLRD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_HALHL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=gatA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.131e-27
Identity = 84/243 (34.57%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ ++  A    +++SR+L +  L  I + +P L+ +I V  + A + AD AD   +   AG L G   +P++ KD   T D + TT GS  L     P DA VV +L +AGA++LGKA++ E++   SS   S F    G  +NP+ L A P              LA  + GT+T GSI  P++ + + GLKPT G  SR G++      D  GP  RT  D A +L  +AG D  D
Sbjct:    1 MHQKTVAEISAALHAGEISSRELTDSLLKRIEQFDPRLNSLITVTAEQARAAADAADARLRAGEAGPLTG---VPLVHKDIFCT-DGVATTCGSRMLEPFRAPYDATVVRRLAEAGAVMLGKANMDEFA-MGSSNETSYF----GPVRNPWDLDAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPAALSGICGLKPTYGRVSRYGMVAFASSLDQAGPFARTAEDLALLLGGMAGLDERD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_HELMI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=gatA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.090e-27
Identity = 84/239 (35.15%), Postives = 124/239 (51.88%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            T  +L     + ++++ ++V+     +  L P +   + +  D AL QA + D   K+ A  ++  L GIP+ +KDN+ T D + TT  S  L   V P DA VV KL++AGA+++GK +L E++   SS   SGF        NP+ +   P               A  SLG++T GSI  P++   VVGLKPT G  SR G+I      D +GP  R V D A+V++AIAG D  D
Sbjct:    7 TAHELHDLLVRKEVSATEIVKTQADRMQALEPKIRAFVTLTVDKALEQAARVD--AKIAAGEAIGPLEGIPMAIKDNMCT-DGVRTTCSSKILNNFVPPYDATVVTKLKEAGAVMMGKTNLDEFA-MGSSTENSGFFATC----NPWDIERVPGGSSGGSAASVAAGQAVFSLGSDTGGSIRQPAAFCGVVGLKPTYGAVSRFGLIAFASSLDQIGPFTRDVRDCAHVMNAIAGHDAKD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_GEOUR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter uraniireducens (strain Rf4) GN=gatA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.090e-27
Identity = 88/241 (36.51%), Postives = 123/241 (51.04%), Query Frame = 1
Query:  121 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            E TI +L    K+ +++S +     L  I  + P ++  I V P+ AL  A+ AD  R++ AAG ++ L GIPI LKD   TK  + TT  S  L   + P DA  V +L+  G +++GK +  E++   S++     S   G+  NP+ L   P               A  +LGT+T GSI  P+S    VGLKPT G  SR GVI      D VGP+ R V D A +L A+AGFD  D
Sbjct:    5 ELTIHELHDKLKKKEVSSVEATRALLARIDAVEPRVNAFITVTPEEALKNAEAAD--RRI-AAGDMQLLTGIPIALKDIFLTKG-VRTTCASRILDNFIPPYDATSVARLKAQGMVLVGKLNQDEFAMGSSTE-----SSYYGKTHNPWNLECIPGGSSGGSAAAIAARQAIATLGTDTGGSIRQPASHCGCVGLKPTYGRVSRYGVIAYASSLDQVGPVTRDVTDCAIMLGAVAGFDPKD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_GEOSF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter sp. (strain FRC-32) GN=gatA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.090e-27
Identity = 87/241 (36.10%), Postives = 121/241 (50.21%), Query Frame = 1
Query:  121 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            E TI +L    K+ +++S +  E  L  I  + P ++  I V  D AL  A +AD   K  A G +  L GIP+ LKD   TK  + TT  S  L   + P DA  V +L+  GA+++GK +  E++   S++     S   G+  NP+ L   P               A  +LGT+T GSI  P+S    VGLKPT G  SR GVI      D VGP+ R V D A +L+A+AG+D  D
Sbjct:    5 ELTIHELHDKLKKKEVSSVEATESMLARIEAVEPKVNAFITVTADQALKDAAEAD---KRIADGDMDKLTGIPVALKDIFLTKG-VRTTCASRILENFIPPYDATSVARLKARGAVLVGKLNQDEFAMGSSTE-----SSYFGKTSNPWNLECIPGGSSGGSAAAIAAQQATATLGTDTGGSIRQPASHCGCVGLKPTYGRVSRYGVIAYASSLDQVGPVTRDVTDCAIMLEAVAGYDAKD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ACIC1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=gatA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.090e-27
Identity = 83/238 (34.87%), Postives = 123/238 (51.68%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            T  +L       ++++ ++   +L  I  ++P +H  + V+ D    A +A  + ++ A   L  L G+P+ LKD   T+  M TT GS  L G + P DA VV K+R AG +ILGK ++ E++   SS   S F    G  +NP+ LS  P               A +++GT+T GSI  P++   +VG KPT G  SR G++  +   D  GP  RTV DAAY+  AIAG D  D
Sbjct:    8 TAVELAAMIAAREVSAEEVTRAHLDRIAAVDPAVHAFLYVDADGALTAARA-VDARLAAGERLGPLAGVPLALKDVFTTRG-MPTTCGSKILEGWIPPYDATVVQKIRDAGIVILGKTNMDEFA-MGSSTENSAF----GPTRNPWDLSRIPGGSSGGSAAAVAAFEAPLAIGTDTGGSIRQPAAVTGIVGTKPTYGGVSRYGLVAFSSSLDQAGPFARTVLDAAYLHAAIAGHDPRD 238          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_METFK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gatA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.111e-27
Identity = 84/239 (35.15%), Postives = 120/239 (50.21%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++K L       +++S +L + YL  I +LNP ++  I VNP+ +L+QA  AD      A G    L GIPI  KD    K    TT GS  L   + P DAG++ +   AGA+ LGK ++ E++   SS   S F    G+ +NP+  S  P              L A + GT+T GSI  P+S   + GLKPT GL SR G+I      D  GP+  +  D A +++ + GFD  D
Sbjct:    5 SLKQLADMLASKEISSVELTQEYLNRIAQLNPEINAYITVNPELSLAQAQAADQRI---ANGDAGPLTGIPIAQKDIFCAKG-WRTTCGSRMLENFIAPYDAGIIERFNAAGAVNLGKTNMDEFA-MGSSNETSYF----GKVQNPWDRSRVPGGSSGGSAAAVAARLCAAATGTDTGGSIRQPASLCGLSGLKPTYGLASRYGMIAFASSLDQAGPMAHSAEDMALMMNVMTGFDERD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_DESAA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=gatA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.111e-27
Identity = 83/244 (34.02%), Postives = 126/244 (51.64%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPR-DAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + E TI   +      +++S+ L +  L  I  + P +   + V+ + A+  A KAD   K  A G    L GIP+ +KD + TK  + T A    +LG+ VP  DA  + KL++AGA+++GK ++ E++   SS   S F       KNP+ L+  P             ++   + G++T GSI  P S  SVVGLKPT G  SR G++      D +GP  +TV DAA +L A+AG+D  D
Sbjct:    3 LHELTIGQAREKLLSKEISSQDLTKAVLDRIEAVEPQVDAYLTVSKEEAMEAAQKAD---KALAQGETAPLCGIPLAIKDVMCTKGVLTTCASK--ILGNFVPPYDATSITKLKEAGAVLVGKTNMDEFA-MGSSTENSAFKTT----KNPWDLTRTPGGSSGGSAAAVAADMCLGAFGSDTGGSIRQPGSHCSVVGLKPTYGRVSRYGLVAFASSLDQIGPFAKTVEDAAILLQAVAGYDPSD 236          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BDEBA1.406e-2731.82Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_THETN1.836e-2734.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_SYNAS2.398e-2734.71Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_HALHL3.131e-2734.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_HELMI4.090e-2735.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_GEOUR4.090e-2736.51Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_GEOSF4.090e-2736.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_ACIC14.090e-2734.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_METFK9.111e-2735.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_DESAA9.111e-2734.02Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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