CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CLOPH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=gatA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.111e-27
Identity = 91/252 (36.11%), Postives = 126/252 (50.00%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKV-KAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD-PATRAAS 861
            I + T  +L    KQ +L+  + V+     I +  P  H  I VN + AL QA K     +  K A S   L G+PI +KDNI  K  M TT  S  L   + P +A V+ +L+ AGAIILGK ++ E++   S+   S F    G  KNP+ +   P               A ++LGT+T GSI  PS+   V G+KPT G  SR G++      D +GPI R+V+D A  L  I+G D  D    +AAS
Sbjct:    3 ITKLTAIELSKKIKQKELSVEEAVKATFSAIKKREPYYHSYITVNEEEALEQASKIQIAIEAGKFADS--PLAGVPIAIKDNICVKG-MRTTCASKILEDFIPPYNASVIERLKDAGAIILGKTNMDEFA-MGSTTETSYF----GATKNPWNIECIPGGSSGGSAAAVAAEEAFIALGTDTGGSIRQPSAFCGVTGIKPTYGTVSRYGLVAYASSLDQIGPIARSVSDCAATLQVISGADDKDSTCVKAAS 246          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BIFLI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=gatA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.190e-26
Identity = 87/232 (37.50%), Postives = 119/232 (51.29%), Query Frame = 1
Query:  148 AFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A K+  +TSR+LVE +L  I    P +   ++V+ D AL QAD  D  +  +   +L  L G+PI +KD I TK  + TTA S  L G V P DA V+ KL+ AG  ILGK +L E++   SS   S +        NP+     P               A ++LGT+T GSI  P +    VG+KPT G  SR G I +    D +GP+ RTV D+A + + I G D  D
Sbjct:   19 AIKKGDVTSRELVEAHLKVIEAAEPSIKAFLKVSGDVALEQADAFD-AKSAEDKAALPELAGVPIAIKDMIVTKG-IETTAASKILEGWVPPYDATVIEKLKAAGMPILGKTNLDEFAQ-GSSTEHSAYQTT----HNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTGGSIRQPGALTGTVGVKPTYGGVSRFGAIAMASSLDQIGPVSRTVLDSALLQEIIGGHDKRD 243          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BIFLO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bifidobacterium longum GN=gatA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.554e-26
Identity = 87/232 (37.50%), Postives = 119/232 (51.29%), Query Frame = 1
Query:  148 AFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A K+  +TSR+LVE +L  I    P +   ++V+ D AL QAD  D  +  +   +L  L G+PI +KD I TK  + TTA S  L G V P DA V+ KL+ AG  ILGK +L E++   SS   S +        NP+     P               A ++LGT+T GSI  P +    VG+KPT G  SR G I +    D +GP+ RTV D+A + + I G D  D
Sbjct:   19 AVKKGDVTSRELVEAHLKVIEAAEPSIKAFLKVSGDVALEQADAFD-AKSAEDKAALPELAGVPIAIKDMIVTKG-IETTAASKILEGWVPPYDATVIEKLKAAGMPILGKTNLDEFAQ-GSSTEHSAYQTT----HNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTGGSIRQPGALTGTVGVKPTYGGVSRFGAIAMASSLDQIGPVSRTVLDSALLQEIIGGHDKRD 243          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BIFLD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bifidobacterium longum (strain DJO10A) GN=gatA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.554e-26
Identity = 87/232 (37.50%), Postives = 119/232 (51.29%), Query Frame = 1
Query:  148 AFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A K+  +TSR+LVE +L  I    P +   ++V+ D AL QAD  D  +  +   +L  L G+PI +KD I TK  + TTA S  L G V P DA V+ KL+ AG  ILGK +L E++   SS   S +        NP+     P               A ++LGT+T GSI  P +    VG+KPT G  SR G I +    D +GP+ RTV D+A + + I G D  D
Sbjct:   19 AVKKGDVTSRELVEAHLKVIEAAEPSIKAFLKVSGDVALEQADAFD-AKSAEDKAALPELAGVPIAIKDMIVTKG-IETTAASKILEGWVPPYDATVIEKLKAAGMPILGKTNLDEFAQ-GSSTEHSAYQTT----HNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTGGSIRQPGALTGTVGVKPTYGGVSRFGAIAMASSLDQIGPVSRTVLDSALLQEIIGGHDKRD 243          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PROMM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9313) GN=gatA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.030e-26
Identity = 82/237 (34.60%), Postives = 122/237 (51.48%), Query Frame = 1
Query:  130 IKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            I + +   K  ++++R+L +  L  I  ++P LH  +++  D  ++AD    +  + A  SL  L G+P+ +KDN+ TK  + TT  S  L   V P ++ V  +L +AGA++LGK +L E++   SS   S F    G   NP+ +S  P                  +LG++T GSI  P+S   VVGLKPT G  SR G++      D VGP    VADAA +L  IAG D  D
Sbjct:    3 IAEWRQQLKLGEVSARELTDHQLARIAVVDPTLHAFLDITADR-ARADADRIDEALAAGESLPPLAGVPLAIKDNLCTKG-IRTTCSSRMLETFVPPYESTVTERLWQAGAVLLGKTNLDEFA-MGSSTETSAF----GATSNPWDISRVPGGSSGGSAAAVAAGECMAALGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQVGPFTTNVADAAELLQVIAGSDPRD 232          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PROM3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9303) GN=gatA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.030e-26
Identity = 82/237 (34.60%), Postives = 123/237 (51.90%), Query Frame = 1
Query:  130 IKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            I + +   K  ++++R+L++  L  I  ++P LH  ++V  +  ++AD    +  + A  SL  L G+P+ +KDN+ TK  + TT  S  L   V P ++ V  +L +AGA++LGK +L E++   SS   S F    G   NP+ +S  P                  +LG++T GSI  P+S   VVGLKPT G  SR G++      D VGP    VADAA +L  IAG D  D
Sbjct:    3 IAEWRQQLKLGEVSARELIDHQLARIAVVDPTLHAFLDVTAER-ARADADRIDEALAAGESLPPLAGVPLAIKDNLCTKG-IRTTCSSRMLETFVPPYESTVTERLWQAGAVLLGKTNLDEFA-MGSSTETSAF----GATSNPWDISRVPGGSSGGSAAAVAAGECMAALGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQVGPFTTNVADAAELLQVIAGSDPRD 232          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PELPD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter propionicus (strain DSM 2379) GN=gatA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.030e-26
Identity = 85/241 (35.27%), Postives = 122/241 (50.62%), Query Frame = 1
Query:  121 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + T+ +L    K  +++SR+     L  I  L P ++  I V P+ AL++A+ AD  R++ AAG    L GIP+ +KD   T+  + TT GS  L   + P  A    KL++ G ++LGK +  E++   S++     S   G  +NP+     P               A V+LGT+T GSI  P+S    VGLKPT G  SR GVI      D VGP+ R V D A +L A+AG D  D
Sbjct:    5 DLTLHELHAKLKSKEVSSREATSAMLDRIAELEPRINAFITVTPERALAEAEAAD--RRI-AAGEADVLTGIPLAVKDIFLTEGTL-TTCGSRILNNFIPPYSATSFEKLKQRGMVLLGKLNQDEFAMGSSNE-----SSASGPCRNPWNTDCIPGGSSGGSAAAIAARQATVTLGTDTGGSIRQPASHCGCVGLKPTYGRVSRYGVIAYASSLDQVGPLTRDVTDCAIMLGALAGHDPKD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PELCD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=gatA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.030e-26
Identity = 89/243 (36.63%), Postives = 121/243 (49.79%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA-LSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + TI +LQ   K  +++SR+L + +L  I   +  +   I  + +A L  A+ AD      AAG+   L GIP+ LKD   T+  M TT  S  L   V P     V KL++  A+ILGK ++ E++   SS   S F    G  KNP+     P               A  +LGT+T GSI  P+S   VVGLKPT G  SR GVI      D VGP+ R V D A +L A+AG+D  D
Sbjct:    3 LTDLTIHELQALLKNREISSRELTQAFLTRIADTDQRIGAFITQSEEAALKNAEAADARL---AAGNAASLTGIPLALKDIFITEG-MRTTCASRILDNFVPPYSGTAVRKLQEQDAVILGKLNMDEFA-MGSSNENSAF----GTVKNPWNQDCVPGGSSGGSAACVAARQAVATLGTDTGGSIRQPASHCGVVGLKPTYGRVSRYGVIAYASSLDQVGPLTRDVEDCALMLGAVAGYDPAD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_EXIS2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=gatA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.030e-26
Identity = 88/247 (35.63%), Postives = 125/247 (50.61%), Query Frame = 1
Query:  121 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAAS 861
            E  +K+L    K  ++   +LV+     I R++  +   + +N DA  QA + D   K +A      L G+PI +KDNI TK  M TT GS  L   V   DA VV +L +AGAI +GK ++ E++   SS   S +       +NP+     P                  SLG++T GSI  P++   VVGLKPT GL SR G++      D +GP+ RTV D AY+L AIAG  H D  + +A+
Sbjct:    5 EHGVKNLHTLVKDGEVKVSELVQESFDRIDRVDGKIGAFLSLNEDAFEQAKRMDEIAKHEA----NPLFGLPIGVKDNIVTKG-MTTTCGSKFLENFVPAHDATVVERLHEAGAITIGKLNMDEFA-MGSSNENSAYK----PVRNPWNTKHVPGGSSGGSAAAVAAGEVLFSLGSDTGGSIRQPAAYCGVVGLKPTYGLVSRYGLVAFASSLDQIGPLTRTVEDNAYLLSAIAG--HCDMDSTSAN 239          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ANASP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anabaena sp. (strain PCC 7120) GN=gatA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.030e-26
Identity = 85/240 (35.42%), Postives = 123/240 (51.25%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A+I++L     + + ++ ++ +  L  I  L P LH  + +    AL QA   D   K+ A   +  L GIPI +KDN+ TK  + TT  S  L   V P ++ V  KL  AGA+++GK +L E++   SS   S +        NP+ LS  P                 V+LG++T GSI  P+S   VVGLKPT GL SR G++      D +GP  ++V D A +L AIAG+DH D
Sbjct:    2 ASIRELHEQLVKKERSAVEITQETLDHIQELEPKLHSFLHITAQQALEQARAVD--AKIAAGEEIGLLAGIPIGVKDNMCTKG-IPTTCASRILENFVPPYESTVTQKLLDAGAVVVGKTNLDEFA-MGSSTENSAYQVTA----NPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFGKSVEDTAILLKAIAGYDHQD 233          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CLOPH9.111e-2736.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BIFLI1.190e-2637.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BIFLO1.554e-2637.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BIFLD1.554e-2637.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_PROMM2.030e-2634.60Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROM32.030e-2634.60Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PELPD2.030e-2635.27Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PELCD2.030e-2636.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_EXIS22.030e-2635.63Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_ANASP2.030e-2635.42Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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