CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ACIC5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.992e-19
Identity = 72/196 (36.73%), Postives = 94/196 (47.96%), Query Frame = 1
Query:  253 DALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            DALS+ ++A              + G+P  +KD + T + M  TA S  L G   P  A  V +L  AGA+++GK +  E++   SS   S +    G  KNP  L   P             N+A  +LGT+T GSI  P+S   VVG+ PT G  SR G+I      D VGP   TV DAA VL  IAG D  D
Sbjct:   57 DALSREERAKLP-----------MGGVPFGIKD-VLTVEGMPATASSKILEGYRPPYTATAVQRLIDAGAVLVGKLNCDEFA-MGSSNENSAY----GPVKNPRALDRVPGGSSGGSAAAVAANMAVATLGTDTGGSIRQPASFCGVVGVLPTYGRVSRYGLIAFASSLDRVGPFAHTVRDAAEVLGVIAGHDPMD 235          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_WOLPP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Wolbachia pipientis subsp. Culex pipiens (strain wPip) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.132e-19
Identity = 74/247 (29.96%), Postives = 121/247 (48.99%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +R  TI ++    ++   ++ +LVE ++  +   N  L+  I   P+   +A K   E  +K    +  L GIP+ +KD   TK  + TTA S  L   +   ++ V   L K+GA +LGK ++ E++   S+   S F    G  +N ++  +D     P              L A +LG++T GS+  P++   VVG+KPT G  SR G+I      D  G I R+V+D+A +L+ I G+D  D
Sbjct:    4 LRRLTITEMHDGLRRRNFSAVELVETHINAVE--NEQLNAFITKTPEIAIKAAKIADEHFLKQKDDIPPLMGIPVGVKDLFCTKG-IKTTACSKMLENFIPTYESTVSNLLLKSGAAVLGKLNMDEFA-MGSANTNSYF----GPVENVWIRKSDGAKVVPGGSSGGSAASVAGFLCAGALGSDTGGSVRQPAAYCGVVGIKPTYGRCSRFGMIAFASSLDQAGVITRSVSDSALMLEIICGYDEKD 242          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_THEYD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.132e-19
Identity = 65/173 (37.57%), Postives = 89/173 (51.45%), Query Frame = 1
Query:  322 LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            L GIPI +KDNI TK  + TT  S  L     P ++ V  KL     I++GK ++ E++   SS   SGF       KNP+ L   P             +    +LG++T GSI  P+S   VVGLKPT G  SR G++      D +GPI + VADAA +++ I+G D  D
Sbjct:   70 LTGIPIAVKDNICTKGIL-TTCASKILYNFYPPYESTVTSKLLNNKYILIGKTNMDEFA-MGSSTENSGFHVT----KNPWDLERVPGGSSGGSAAAVAADECIAALGSDTGGSIRQPASFCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITKCVADAALLMNVISGHDPMD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_SULDN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.132e-19
Identity = 69/225 (30.67%), Postives = 105/225 (46.67%), Query Frame = 1
Query:  166 LTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +T ++ ++    E+      L   IE NP+  +  D       +   G      G+PI +KDNI  KD  + T+GS  L G + P +A V+ K+  AG    G+ ++ E++    S   S F G+     NP+     P              LA  +LG++T GSI  P+S   +VG+KPT G  SR G+       D +GP+ + V DAA + D I+G D  D
Sbjct:    2 ITLKEALKLSKDELENFKNDLKAKIEANPELNAYID-------IYNIGD-----GVPIAIKDNIQVKD-WSVTSGSNILQGYIAPYNATVIEKMLSAGLSPFGRTNMDEFA--MGSTTESSFYGKT---LNPHNKDCVPGGSSGGSAAAVGAGLAIAALGSDTGGSIRQPASFCGIVGMKPTYGRVSRYGLGAYASSLDQIGPMTQNVEDAAILYDIISGHDEKD 208          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_STRPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus pneumoniae (strain CGSP14) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.132e-19
Identity = 73/238 (30.67%), Postives = 111/238 (46.64%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI++L       ++++ +L +  L +I      L+  + +  +      KA  E  + A   L G   IP+ +KDNI+T D + TTA S  L       DA  V   +  G I++GK ++ E++        SG +   G  KN +  S  P                 +SLG++T GSI  P++ N +VGLKPT G  SR G+I      D +GP   TV + A +L+AIA  D  D
Sbjct:    7 TIEELHNLLVSKEISATELTQATLEDIKSREEALNSFVTIAEEQALVQAKAIDEAGIDADNVLSG---IPLAVKDNIST-DGILTTAASKMLYNYEPIFDATAVANAKTKGMIVVGKTNMDEFA-----MGGSGETSHYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGPFAPTVKENALLLNAIASEDAKD 235          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_RICPR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rickettsia prowazekii GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.132e-19
Identity = 74/247 (29.96%), Postives = 115/247 (46.56%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ +     K    TS++LV  Y+ +I +   L   V E    AL QA+ AD       A   R L GIP  +KD   TK  + TTA S  L   +   ++ V   +   G +ILGK ++ E++   S+   S F    G   +P+  + D     P              +A+ +LG++T GS+  P+S   +VG KPT G  SR G++      D  G   R+V D++ +L+A+ GFD  D
Sbjct:    4 LNKLTVAESVKGLKNKDFTSKELVNAYIKQIEKYKNLNAYVTETFDLALKQAEAADQNYGQNKA---RTLEGIPFAVKDLFCTKG-IRTTACSNILKNFIPHYESSVTQNIFDKGGVILGKTNMDEFA-MGSANITSCF----GNVISPWKANDDNSDLVPGGSSGGSAAAVSAFMASAALGSDTGGSVRQPASFTGLVGFKPTYGRCSRYGMVSFASSLDQAGIFTRSVLDSSIMLEAMMGFDEKD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_RHOS4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.132e-19
Identity = 78/244 (31.97%), Postives = 118/244 (48.36%), Query Frame = 1
Query:  121 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLS---ADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            E TI D + A  + +L++  L    L  I    PL +  +   P+ AL QA  AD  R   A      L+GIP+ +KD   T+  + + A S  L G     ++ V  KL +AGA++LGK ++ E++   SS   S +    G   NP+ +      P             +L   + GT+T GSI  P++   +VG+KPT G  SR G++      D  GP+ ++V DAA +L A+AG D  D
Sbjct:    5 ELTIADARDALAKGELSAVDLTMACLTAIDAGTPL-NAFVHATPEIALDQARAADARRGAGAGA----LNGIPLGIKDLFCTRG-VASQAASNILKGFKPEYESTVTSKLFEAGAVMLGKLNMDEFA-MGSSNETSCY----GDAVNPWKVDDRRLTPGGSSGGSAAAVAADLCLAATGTDTGGSIRQPAAFTGIVGIKPTYGRVSRWGIVAFASSLDQAGPMTKSVRDAAILLGAMAGHDPKD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_HALSA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Halobacterium salinarium GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.132e-19
Identity = 67/179 (37.43%), Postives = 93/179 (51.96%), Query Frame = 1
Query:  322 LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAA 858
            L G  + +KDNI+TK  + TT GS  L     P +A VV  L  AG  I+GK ++ E+    +++  S F    G  KNP   +  P               A ++LG++T GS+  P++   VVGLKPT GL SR G++      + +GPI  TV  AA +LD IAG D +D  TR A
Sbjct:   20 LDGTTVAVKDNISTKG-VPTTCGSKMLADYEPPYNATVVEDLLAAGGTIVGKTNMDEFGMGTTTET-SYF----GPTKNPVDETRVPGGSSGGSAAAVANGDADLALGSDTGGSVRAPAAYCGVVGLKPTYGLVSRYGLVAYANSLEQIGPIAPTVEGAAELLDVIAGPDEHDGTTRDA 192          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BRUAB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brucella abortus GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.132e-19
Identity = 76/243 (31.28%), Postives = 110/243 (45.27%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI + +   K   +T+ +L + YL  I   N  ++  + V  D      KA  ER  K  G    L GIP+ +KD  ATK  ++T A S+ L G     ++ V   L   GA++LGK ++ E +   SS   S +    G  KNP+          P             +L A +  T+T GSI  P++    VG+KPT G  SR G +      D  GPI R V DAA ++ ++A  D  D
Sbjct:    8 TIAEARDKLKAKAITATELTDAYLSAIDAANDAINAYVAVTHDQARSMAKASDERIAK--GEAGALEGIPLGVKDLFATKG-VHTQACSHILDGFKPEYESTVTANLWADGAVMLGKLNMDEVA-MGSSNETSYY----GPVKNPWRAKGSNADLVPGGSSGGSAAAVAAHLCAGATATDTGGSIRQPAAFTGTVGIKPTYGRVSRWGTVAFASSLDQAGPIARDVRDAAILMKSMASLDLKD 242          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BRUA2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Brucella abortus (strain 2308) GN=gatA PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.132e-19
Identity = 76/243 (31.28%), Postives = 110/243 (45.27%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI + +   K   +T+ +L + YL  I   N  ++  + V  D      KA  ER  K  G    L GIP+ +KD  ATK  ++T A S+ L G     ++ V   L   GA++LGK ++ E +   SS   S +    G  KNP+          P             +L A +  T+T GSI  P++    VG+KPT G  SR G +      D  GPI R V DAA ++ ++A  D  D
Sbjct:    8 TIAEARDKLKAKAITATELTDAYLSAIDAANDAINAYVAVTHDQARSMAKASDERIAK--GEAGALEGIPLGVKDLFATKG-VHTQACSHILDGFKPEYESTVTANLWADGAVMLGKLNMDEVA-MGSSNETSYY----GPVKNPWRAKGSNADLVPGGSSGGSAAAVAAHLCAGATATDTGGSIRQPAAFTGTVGIKPTYGRVSRWGTVAFASSLDQAGPIARDVRDAAILMKSMASLDLKD 242          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_ACIC56.992e-1936.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_WOLPP9.132e-1929.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=W... [more]
GATA_THEYD9.132e-1937.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_SULDN9.132e-1930.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRPS9.132e-1930.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_RICPR9.132e-1929.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_RHOS49.132e-1931.97Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_HALSA9.132e-1937.43Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_BRUAB9.132e-1931.28Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BRUA29.132e-1931.28Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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