CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_STRSV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus sanguinis (strain SK36) GN=gatA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.919e-18
Identity = 79/239 (33.05%), Postives = 117/239 (48.95%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI++L     + ++++ +L +  L +I      +   I V+ + AL+QA   D     K   +   + GIP+ +KDNI+TK  + TTA S  L       DA  V KL     II+GK ++ E++   SS+  S F       KN +  S  P                 +SLG++T GSI  P+S N VVGLKPT G  SR G+I      D +GP  +TV + A +L+ I+G D  D
Sbjct:    7 TIEELHDLLVKKEISAVELTQATLADIKEREAAVDSFITVSEEEALAQAAALD----AKGIDADNLMSGIPLAVKDNISTKGIL-TTAASKILYNYKPIFDATSVEKLYGKDMIIVGKTNMDEFAMGGSSEN-SYFKTT----KNAWDSSKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPASFNGVVGLKPTYGRVSRFGLIAFGSSLDQIGPFSQTVKENAQLLNVISGNDPKD 235          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSYCK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Psychrobacter cryohalolentis (strain K5) GN=gatA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.919e-18
Identity = 68/237 (28.69%), Postives = 112/237 (47.26%), Query Frame = 1
Query:  133 KDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVI-EVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + L    +  + +S +L + Y+  I+ L+  ++  I   +  A +QA  AD   +++  G  R L G+P+  KD   T+  + TT GS  L   + P DA +V  + KAG I LGK ++ E++    ++     S   G   NP+ ++  P                 V+ G++T GSI  P+S   + G+KPT G  SR G+I      D  G + R+  D A++L  + G D  D
Sbjct:   10 QQLITGLQDKQFSSLELTDHYIKRINALDSKINSFITHTSETARAQAKAAD---EMRVQGDKRPLLGVPMAHKDIFCTQGVL-TTCGSKMLHNFISPYDATIVTNIDKAGMISLGKLNMDEFAMGSDNE-----SSYYGAVHNPWNIAHVPGGSSGGSAAAVAAGFVPVATGSDTGGSIRQPASFCGLTGIKPTYGRVSRFGMIAYASSLDQAGSMGRSAMDCAFLLQPMIGHDPRD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_FRATO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=gatA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.919e-18
Identity = 72/238 (30.25%), Postives = 113/238 (47.48%), Query Frame = 1
Query:  130 IKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEV-NPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            IK L+      ++++ +L + YL +I   +  ++ +I +   +AL +A+ AD    + +AG    L GIPIL KD   TK  + TTA S  L   V P D+ V    +  G + LGK ++ E++   S+   S +    G   NP+ L   P               A +S G++T GS+  P+S   +  +KP+ G TSR G++      D  G       D A +LDAIAG   +D
Sbjct:    4 IKKLRARLDSGEISAVELTKEYLAKIKEQDKRINSIITLCEAEALKEAEDAD---AIISAGKQGLLTGIPILHKDLFCTKG-IRTTAASKMLDNFVAPYDSTVTKNCKDQGMVTLGKLNMDEFA-MGSTNEYSYY----GAVSNPWDLERVPGGSSGGSAAAVAAGFAPISTGSDTGGSVRQPASFCGLTAMKPSYGSTSRFGMVAFASSFDQAGIFGHYAEDVAIMLDAIAGECEFD 232          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_FRATH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Francisella tularensis subsp. holarctica (strain LVS) GN=gatA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.919e-18
Identity = 72/238 (30.25%), Postives = 113/238 (47.48%), Query Frame = 1
Query:  130 IKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEV-NPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            IK L+      ++++ +L + YL +I   +  ++ +I +   +AL +A+ AD    + +AG    L GIPIL KD   TK  + TTA S  L   V P D+ V    +  G + LGK ++ E++   S+   S +    G   NP+ L   P               A +S G++T GS+  P+S   +  +KP+ G TSR G++      D  G       D A +LDAIAG   +D
Sbjct:    4 IKKLRARLDSGEISAVELTKEYLAKIKEQDKRINSIITLCEAEALKEAEDAD---AIISAGKQGLLTGIPILHKDLFCTKG-IRTTAASKMLDNFVAPYDSTVTKNCKDQGMVTLGKLNMDEFA-MGSTNEYSYY----GAVSNPWDLERVPGGSSGGSAAAVAAGFAPISTGSDTGGSVRQPASFCGLTAMKPSYGSTSRFGMVAFASSFDQAGIFGHYAEDVAIMLDAIAGECEFD 232          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_FRATF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=gatA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.919e-18
Identity = 72/238 (30.25%), Postives = 113/238 (47.48%), Query Frame = 1
Query:  130 IKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEV-NPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            IK L+      ++++ +L + YL +I   +  ++ +I +   +AL +A+ AD    + +AG    L GIPIL KD   TK  + TTA S  L   V P D+ V    +  G + LGK ++ E++   S+   S +    G   NP+ L   P               A +S G++T GS+  P+S   +  +KP+ G TSR G++      D  G       D A +LDAIAG   +D
Sbjct:    4 IKKLRARLDSGEISAVELTKEYLAKIKEQDKRINSIITLCEAEALKEAEDAD---AIISAGKQGLLTGIPILHKDLFCTKG-IRTTAASKMLDNFVAPYDSTVTKNCKDQGMVTLGKLNMDEFA-MGSTNEYSYY----GAVSNPWDLERVPGGSSGGSAAAVAAGFAPISTGSDTGGSVRQPASFCGLTAMKPSYGSTSRFGMVAFASSFDQAGIFGHYAEDVAIMLDAIAGECEFD 232          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BACSK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus clausii (strain KSM-K16) GN=gatA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.919e-18
Identity = 65/168 (38.69%), Postives = 84/168 (50.00%), Query Frame = 1
Query:  322 LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAG 825
            L G+PI +KDNI TK  + TT  S  L       DA VV KLR A  + +GK ++ E++   SS   S F          YV    P                  +LG++T GSI  P++   VVGLKPT G  SR G++      D +GPI RTV D AY+L+AIAG
Sbjct:   69 LFGMPIGIKDNIVTKG-LRTTCSSKILENFDPIYDATVVTKLRGAETVTIGKINMDEFA-MGSSNENSAFQVTTNPWNTDYV----PGGSSGGSAAAVAAGEVPFALGSDTGGSIRQPAAYCGVVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAYLLEAIAG 230          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_WOLWR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Wolbachia sp. subsp. Drosophila simulans (strain wRi) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.010e-17
Identity = 76/248 (30.65%), Postives = 122/248 (49.19%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +R+ +I  +    K+   ++ +LVE ++  +   N  L+  I   P+   +A KA  E   +    L   L G+P+ +KD   TK  + TTA S  L   V   ++ V   L K+GA +LGK ++ E++   S+   S F    G  +N ++  +D     P              L A +LG++T GS+  P++   VVG+KPT G  SR G+I      D  G I R+V+D+A +L+AI G+D  D
Sbjct:    4 LRKLSITQMHDGLKKKSFSAVELVEAHISAVE--NEKLNAFITKTPEIAMKAAKAADEHFSRQKDDLISPLMGVPVGIKDLFCTKG-IKTTACSKMLENFVPTYESTVSDLLLKSGAAMLGKLNMDEFA-MGSANTNSYF----GPVENVWIRKSDGEKVVPGGSSGGSAASVAGFLCAGALGSDTGGSVRQPAAYCGVVGIKPTYGRCSRFGMIAFASSLDQAGVITRSVSDSALMLEAICGYDTKD 243          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_WOLPM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Wolbachia pipientis wMel GN=gatA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.010e-17
Identity = 76/248 (30.65%), Postives = 122/248 (49.19%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +R+ +I  +    K+   ++ +LVE ++  +   N  L+  I   P+   +A KA  E   +    L   L G+P+ +KD   TK  + TTA S  L   V   ++ V   L K+GA +LGK ++ E++   S+   S F    G  +N ++  +D     P              L A +LG++T GS+  P++   VVG+KPT G  SR G+I      D  G I R+V+D+A +L+AI G+D  D
Sbjct:    4 LRKLSITQMHDGLKKKSFSAVELVEAHISAVE--NEKLNAFITKTPEIAMKAAKAADEHFSRQKDDLISPLMGVPVGIKDLFCTKG-IKTTACSKMLENFVPTYESTVSDLLLKSGAAMLGKLNMDEFA-MGSANTNSYF----GPVENVWIRKSDGEKVVPGGSSGGSAASVAGFLCAGALGSDTGGSVRQPAAYCGVVGIKPTYGRCSRFGMIAFASSLDQAGVITRSVSDSALMLEAICGYDTKD 243          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_RICAH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rickettsia akari (strain Hartford) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.010e-17
Identity = 74/247 (29.96%), Postives = 114/247 (46.15%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ D     K    TS++LV  ++ +I +   L   V E    AL QA+ AD      A    R L GIP   KD   TK  + TTA S  L   V   ++ V   +   G ++LGK ++ E++   S+   S F    G   +P+  + D     P              +A+ +LG++T GS+  P+S   +VG KPT G  SR G++      D  G   R+V D++ +L+A+ GFD  D
Sbjct:    4 LNKLTVADSIKGLKNKDFTSKELVNAHITQIEKHRNLNAYVTETFDLALKQAEAADQNY---AQNQPRTLEGIPFAAKDLFCTKG-IRTTACSNILKNFVPNYESSVTQNIFDKGGVMLGKTNMDEFA-MGSANITSCF----GNVISPWKANDDNADLVPGGSSGGSAAAVSGFMASAALGSDTGGSVRQPASFTGLVGFKPTYGRCSRYGMVSFASSLDQAGIFTRSVLDSSIMLEAMMGFDAKD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PELLD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pelodictyon luteolum (strain DSM 273) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.010e-17
Identity = 77/246 (31.30%), Postives = 114/246 (46.34%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEI--HRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRA 855
            ++ +DL+     + +T   +   YL  I  H  + +   V E   +AL +A   D   K+   G+   L G+P+ +KDNI+ K    T A S  L G     DA  V++L    AI LGK ++ E++   SS   S F    G   NP+     P              LA V+LG++T GS+  P+    +VGLKPT G  SR G++      D +G +     DAA VL+ +AG D  D  + A
Sbjct:    4 SSYEDLRSRLLSHAVTCEAVARHYLDRIRSHEGDNIYITVFE--NEALQRARSLDL--KLAGGGTPGRLFGMPMAIKDNISMKGAPLTCA-SKMLEGYTSVYDATAVLRLEAEDAIFLGKTNMDEFA-MGSSNENSAF----GPVPNPFDNQRVPGGSSGGSAAAVAAGLAMVALGSDTGGSVRQPAGFCDIVGLKPTYGRISRYGLVAFASSFDQIGVLALNCDDAALVLEVMAGVDGKDATSSA 239          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_STRSV5.919e-1833.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PSYCK5.919e-1828.69Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_FRATO5.919e-1830.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=F... [more]
GATA_FRATH5.919e-1830.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=F... [more]
GATA_FRATF5.919e-1830.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=F... [more]
GATA_BACSK5.919e-1838.69Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_WOLWR1.010e-1730.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=W... [more]
GATA_WOLPM1.010e-1730.65Glutamyl-tRNA(Gln) amidotransferase subunit A OS=W... [more]
GATA_RICAH1.010e-1729.96Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_PELLD1.010e-1731.30Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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