CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_EHRRG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ehrlichia ruminantium (strain Gardel) GN=gatA PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.010e-17
Identity = 77/247 (31.17%), Postives = 123/247 (49.80%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYV----LSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            I + +I ++     + + ++ +L + ++  I+  N  L+  I   P+ AL+ A KAD+         +  L GIP+ +KD   TK+ + TTA S  L       D+ VV +L   GA++LGK ++ E++   SS + S F    G  +NP+     +   P              L A +LG++T GS+  P++   +VGLKPT G  SR+G+I      D  G + RTV DAA +L  I G+D  D
Sbjct:    4 ILKLSIAEMHENLIKKEFSAVELTQAHIDAIN--NEQLNAFITKTPEVALNAARKADHIL-THEQDKITSLTGIPVGIKDLFCTKN-IKTTACSNILRNFTPQYDSTVVKRLIDDGAVMLGKLNMDEFA-MGSSNSNSCF----GPVENPWTRADGVKVVPGGSSGGSSAAVAGFLCAGALGSDTGGSVRQPAAFCGIVGLKPTYGRCSRSGMIAFASSLDQAGVLTRTVKDAALMLQPICGYDTQD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CHLTE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium tepidum GN=gatA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.010e-17
Identity = 69/236 (29.24%), Postives = 115/236 (48.73%), Query Frame = 1
Query:  133 KDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +DL+      +LT  Q++  YL  I          +  + +A+++A + D   K++   +   L G+PI +KDNIA K    + A S  L G     DA V+ +++   AI +G+ ++ E++   S++     +   G   NPY  +  P             +LA V+LG++T GS+  P+   +++GLKPT G  SR G++      D +G +     DAA VL  IAG D +D
Sbjct:    7 EDLRSRLLSGELTCEQVISDYLQRIDSSRDDNIFTVVFHDEAMARARELD--SKLQRGEAPGVLFGMPIAIKDNIAMKGAPLSCA-SKILAGYESVYDATVIKRMQAEDAIFVGRTNMDEFAMGSSNE-----NSAIGPVPNPYDKTRVPGGSSGGSAAAVANDLAMVALGSDTGGSVRQPAGFCNIIGLKPTYGRISRYGLVAFASSFDQIGLLAANCDDAALVLGVIAGKDEHD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_AKKM8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.010e-17
Identity = 62/173 (35.84%), Postives = 85/173 (49.13%), Query Frame = 1
Query:  322 LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            L GIPI +KDNI    +  T   S  L   V P DA  +  L++AG I LG+ ++ E++        SG +   G  +NP      P               A  +LG++T GSI  P+    +VGLKPT G  SR G++      D +GP+ RTV DAA +L AI+G D  D
Sbjct:   63 LAGIPIAVKDNINVLGQP-TRCASRLLSPYVAPYDATSIRLLKEAGGIPLGRTNMDEFA-----MGASGENSAYGITRNPEAPDRIPGGSSSGSAAAVASATAIAALGSDTGGSIRQPAGHCGIVGLKPTYGRVSRYGLVAFASSLDQIGPMTRTVEDAAILLQAISGHDRKD 229          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_TREPS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Treponema pallidum subsp. pallidum (strain SS14) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.319e-17
Identity = 75/216 (34.72%), Postives = 99/216 (45.83%), Query Frame = 1
Query:  226 LHGVIEVNPDALSQADKADYER-----KVKAAGSLRG------LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            L  ++E   DA   A  AD  R       K AG+  G      L G+P  +KDNI+ K K + T GS  L     P DA VV +LR AGAI LG+ ++ E++   SS   S +    G  +NP   S                  A  +LGTET GS+  P++   + GLKPT GL SR GV+      D +G     + D A  L   +G D YD
Sbjct:   46 LGALVEFFSDAEEHARTADNLRASCAQSTKTAGANGGSVSGKPLLGLPFAVKDNISVKGK-HCTCGSKLLADYRAPYDATVVARLRAAGAIPLGRTNMDEFA-MGSSTEYSVY----GPTRNPRDRSRTSGGSSGGSAAAVAGGQAPFALGTETGGSVRLPAAYCGLYGLKPTYGLLSRYGVVAFGSSLDQIGFFATCIDDIALALSVTSGKDLYD 255          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_TREPA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Treponema pallidum GN=gatA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.319e-17
Identity = 75/216 (34.72%), Postives = 99/216 (45.83%), Query Frame = 1
Query:  226 LHGVIEVNPDALSQADKADYER-----KVKAAGSLRG------LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            L  ++E   DA   A  AD  R       K AG+  G      L G+P  +KDNI+ K K + T GS  L     P DA VV +LR AGAI LG+ ++ E++   SS   S +    G  +NP   S                  A  +LGTET GS+  P++   + GLKPT GL SR GV+      D +G     + D A  L   +G D YD
Sbjct:   46 LGALVEFFSDAEEHARTADNLRASCAQSTKTAGANGGSVSGKPLLGLPFAVKDNISVKGK-HCTCGSKLLADYRAPYDATVVARLRAAGAIPLGRTNMDEFA-MGSSTEYSVY----GPTRNPRDRSRTSGGSSGGSAAAVAGGQAPFALGTETGGSVRLPAAYCGLYGLKPTYGLLSRYGVVAFGSSLDQIGFFATCIDDIALALSVTSGKDLYD 255          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_RICRS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rickettsia rickettsii (strain Sheila Smith) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.319e-17
Identity = 73/247 (29.55%), Postives = 114/247 (46.15%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ D     K    TS +L+  ++ +I +   L   V E    AL QA+ AD      A  + R L GIP   KD   TK  + TTA S  L   +   ++ V   +   G ++LGK ++ E++   S+   S F    G   +P+  + D     P              +A+ +LG++T GS+  P+S   +VG KPT G  SR G+I      D  G   R+V D++ +L+A+ GFD  D
Sbjct:    4 LNKLTVADSIKGLKNKDFTSAELIGAHIKQIEKHRNLNAYVTETFDLALKQAEAADQNY---AQNNARTLEGIPFAAKDLFCTKG-IRTTACSNILKNFIPNYESSVTQNIFDKGGVMLGKTNMDEFA-MGSANITSCF----GNVISPWKANDDNADLVPGGSSGGSAAAVSGFMASAALGSDTGGSVRQPASFTGLVGFKPTYGRCSRYGMISFASSLDQAGIFTRSVLDSSIMLEAMMGFDEKD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_RICRO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rickettsia rickettsii (strain Iowa) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.319e-17
Identity = 73/247 (29.55%), Postives = 114/247 (46.15%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ D     K    TS +L+  ++ +I +   L   V E    AL QA+ AD      A  + R L GIP   KD   TK  + TTA S  L   +   ++ V   +   G ++LGK ++ E++   S+   S F    G   +P+  + D     P              +A+ +LG++T GS+  P+S   +VG KPT G  SR G+I      D  G   R+V D++ +L+A+ GFD  D
Sbjct:    4 LNKLTVADSIKGLKNKDFTSAELIGAHIKQIEKHRNLNAYVTETFDLALKQAEAADQNY---AQNNARTLEGIPFAAKDLFCTKG-IRTTACSNILKNFIPNYESSVTQNIFDKGGVMLGKTNMDEFA-MGSANITSCF----GNVISPWKANDDNADLVPGGSSGGSAAAVSGFMASAALGSDTGGSVRQPASFTGLVGFKPTYGRCSRYGMISFASSLDQAGIFTRSVLDSSIMLEAMMGFDEKD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_RICPU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rickettsia peacockii (strain Rustic) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.319e-17
Identity = 73/247 (29.55%), Postives = 114/247 (46.15%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ D     K    TS +L+  ++ +I +   L   V E    AL QA+ AD      A  + R L GIP   KD   TK  + TTA S  L   +   ++ V   +   G ++LGK ++ E++   S+   S F    G   +P+  + D     P              +A+ +LG++T GS+  P+S   +VG KPT G  SR G+I      D  G   R+V D++ +L+A+ GFD  D
Sbjct:    4 LNKLTVADSIKGLKNKDFTSTELIGAHIKQIEKHRNLNAYVTETFDLALKQAEAADQNY---AQNNARTLEGIPFAAKDLFCTKG-IRTTACSNILKNFIPNYESSVTQNIFDKGGVMLGKTNMDEFA-MGSANITSCF----GNVISPWKANDDNADLVPGGSSGGSAAAVSGFMASAALGSDTGGSVRQPASFTGLVGFKPTYGRCSRYGMISFASSLDQAGIFTRSVLDSSIMLEAMMGFDEKD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_METHJ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.319e-17
Identity = 58/173 (33.53%), Postives = 86/173 (49.71%), Query Frame = 1
Query:  322 LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            L G+ + +KDNI+TK  + TT  S  L G + P DA VV  L+ AGA I+GK ++ E+    +++     +   G   NP      P              L   ++G++T GSI CP++   +VGLKPT G  SR G+I      + +GP+ R V   + +   IAG D  D
Sbjct:   29 LSGVTVAVKDNISTKG-IETTCASKILKGYIPPYDAHVVTLLKNAGAAIVGKTNMDEFGMGTTTE-----NSAYGPTLNPLDHQRVPGGSSGGSAAAVAAGLVDCAIGSDTGGSIRCPAAFCGIVGLKPTYGRVSRFGLIAYANSLEQIGPMARDVQTLSNLYSVIAGHDSRD 195          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CHLAB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydophila abortus GN=gatA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.319e-17
Identity = 65/204 (31.86%), Postives = 96/204 (47.06%), Query Frame = 1
Query:  259 LSQADKADYER------KVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATR 852
            LS  ++  YE+      KV     L  L G+PI +KDNI  +  + TT  S  L   + P DA VV ++     +ILGK ++ E++   S+   S F       KNP+ LS  P                 ++LG++T GSI  P++   VVG KP+ G  SR G++      D +GP+   V D A  +D  AG D  D  ++
Sbjct:   42 LSLCEERAYEKAAIIDAKVARGEPLGKLAGVPIGIKDNIHIRG-LRTTCASKMLENYIAPFDATVVERIEAEDGVILGKLNMDEFA-MGSTTQYSAFHPT----KNPWGLSCVPGGSSGGSAAAVSARFCPIALGSDTGGSIRQPAAFCGVVGFKPSYGAVSRYGLVAFGSSLDQIGPLTTVVEDVALAMDVFAGKDDRDATSQ 239          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_EHRRG1.010e-1731.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_CHLTE1.010e-1729.24Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_AKKM81.010e-1735.84Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_TREPS1.319e-1734.72Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_TREPA1.319e-1734.72Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_RICRS1.319e-1729.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_RICRO1.319e-1729.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_RICPU1.319e-1729.55Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_METHJ1.319e-1733.53Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CHLAB1.319e-1731.86Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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