CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CAMLR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.319e-17
Identity = 63/200 (31.50%), Postives = 93/200 (46.50%), Query Frame = 1
Query:  241 EVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            E+N  A  Q     Y  +           G+P+ +KDNI+ KD    T  S  L G V P DA V+  LRK      G+ ++ E++   S+ A S +    G+  NP+  +  P              LA  SLG++T GS+  P++    VG KP+ G  SR G+   +   D +G + + V DAA + D IAG+D  D
Sbjct:   21 ELNQKAKEQKHLGAYVEQFLDKDLSESGDGVPVAIKDNISVKD-WELTCASKILQGYVAPYDASVITNLRKNNLSPFGRCNMDEFA-MGSTSATSFY----GKTLNPHDNTKVPGGSSGGSAAAVASGLAIASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLAAYSSSLDQIGVLTQNVKDAAILYDVIAGYDEKD 214          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BARBK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.319e-17
Identity = 77/244 (31.56%), Postives = 111/244 (45.49%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI   + + K+    + +L E YL  I   NP+L+  + V  + A+  A ++D       AG L G   IP+ +KD  AT D ++T   SY L G     ++ V   L K GA++LGK ++ E++   SS   S +    G   NP+          P              L   +  T+T GSI  P++    VG+KPT G  SR G I      D  GPI R V D A +L ++A FD  D
Sbjct:    8 TIAQARDSLKKGDFKATELTEAYLQAIELANPILNAYVAVTAEQAMRMAAESDNRLAKGEAGILEG---IPLGIKDLFATYD-VHTQGCSYILDGFKPKYESTVTANLWKDGAVMLGKLNMDEFA-MGSSNETSYY----GPVINPWRKKGSDEKLVPGGSSGGSSAAVAARLCVGATATDTGGSIRQPAAFTGTVGIKPTYGRCSRWGTIAYASSLDQAGPIGRDVRDCAIMLRSMASFDRKD 242          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_RICFE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rickettsia felis GN=gatA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.722e-17
Identity = 72/247 (29.15%), Postives = 114/247 (46.15%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ D     K    TS++LV  ++ +I +   L   V E    AL QA+ AD      A    + L GIP   KD   TK  + TTA S  L   +   ++ V   +   G ++LGK ++ E++   S+   S F    G   +P+  + D     P              +A+ +LG++T GS+  P+S   +VG KPT G  SR G++      D  G   R+V D++ +L+A+ GFD  D
Sbjct:    4 LNKLTVADSVKGLKNKDFTSKELVNAHIKQIEKHKNLNAYVTETFDLALKQAEAADQNY---AQNQPQTLEGIPFAAKDLFCTKG-IRTTACSNILKNFIPNYESSVTQNIFDKGGVMLGKTNMDEFA-MGSANITSCF----GNVISPWKANDDNADLVPGGSSGGSAAAVSGFMASAALGSDTGGSVRQPASFTGLVGFKPTYGRCSRYGMVSFASSLDQAGIFTRSVLDSSIMLEAMMGFDEKD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_MYCGE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycoplasma genitalium GN=gatA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.722e-17
Identity = 75/241 (31.12%), Postives = 111/241 (46.06%), Query Frame = 1
Query:  154 KQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA--LSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSE--------WSNFRSSKAPSGFS--GRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + N L+ R +++     I+ +   ++  IE+N  +  L +     Y +K+  +     L+ IP +LKDNIATKD + TT GS  L   + P  A V   L   GA+++GKA++ E        +S F     P   S    G    + Y ++ D               +   S+ T+T  SI  P+S  +VVG KPT GL SR GV P  P  D VG   + V+D A V D +   D  D
Sbjct:    2 RSNILSLRAILDKKPSAINDVLTSINAKIELNKSSNFLLKNTVEIYSKKINKSDEKILLNNIPYVLKDNIATKDIV-TTGGSLFLKNYLPPFSATVFELLEMNGALLVGKANMDEFGLGGTGSYSAFGVVHHPENSSLIAGGSSSGSAYAVAKD---------------IVPFSIATDTGDSIRRPASICNVVGFKPTYGLISRNGVFPYAPSMDHVGIFAKFVSDIAIVSDVVIKHDKTD 226          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_EHRRW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ehrlichia ruminantium (strain Welgevonden) GN=gatA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.722e-17
Identity = 77/247 (31.17%), Postives = 122/247 (49.39%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYV----LSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            I + +I ++     + + ++ +L + ++  I+  N  L+  I   P+ AL  A KAD+   +     +  L GIP+ +KD   TK+ + TTA S  L       D+ VV +L   GA++LGK ++ E++   SS + S F    G  +NP+     +   P              L A +LG++T GS+  P++   +VGLKPT G  SR G+I      D  G + RTV DAA +L  I G+D  D
Sbjct:    4 ILKLSIAEMHENLIKKEFSAVELTQTHIDAIN--NEQLNAFITKTPEVALDAARKADHIL-IHEQDKITPLTGIPVGIKDLFCTKN-IKTTACSNILRNFTPQYDSTVVKRLIDDGAVMLGKLNMDEFA-MGSSNSNSCF----GPVENPWTRADGVKVVPGGSSGGSSAAVAGFLCAGALGSDTGGSVRQPAAFCGIVGLKPTYGRCSRLGMIAFASSLDQAGVLTRTVKDAALMLQPICGYDTQD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_STRA3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus agalactiae serotype III GN=gatA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.249e-17
Identity = 73/239 (30.54%), Postives = 117/239 (48.95%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +I  L     + ++++ +L +  L +IH     +   I ++ D A++QA + D     K   +   + GIP+ +KDNI+TK  + TTA S  L       DA  V KL     I++GKA++ E++   S++  S F     +  N +  S  P                 +SLG++T GSI  P+S N +VG+KPT G  SR G+       D +GP+ +TV + A +L  I+G D  D
Sbjct:    7 SIDQLHDLLVKKEISATELTKATLEDIHAREQAVGSFITISDDMAIAQAKEIDD----KGIDADNVMSGIPLAVKDNISTKGIL-TTAASKMLYNYEPIFDATAVEKLYAKDMIVIGKANMDEFAMGGSTET-SYFK----KTNNAWDHSKVPGGSSGGSAAAVASGQVRLSLGSDTGGSIRQPASFNGIVGMKPTYGRVSRFGLFAFGSSLDQIGPMSQTVKENAQLLTVISGHDVRD 235          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_RICCN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rickettsia conorii GN=gatA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.249e-17
Identity = 72/247 (29.15%), Postives = 115/247 (46.56%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ D     K    TS +L+  ++ +I +   L   V +    AL QA+ AD +    A  + R L GIP   KD   TK  + TTA S  L   +   ++ V   +   G ++LGK ++ E++   S+   S F    G   +P+  + D     P              +A+ +LG++T GS+  P+S   +VG KPT G  SR G+I      D  G   R+V D++ +L+A+ GFD  D
Sbjct:    4 LNKLTVADSIKGLKNKDFTSTELIGAHIKQIEKHRNLNAYVTDTFDLALKQAEAADQKY---AQNNARTLEGIPFAAKDLFCTKG-IRTTACSNILKNFIPNYESSVTQNIFDKGGVMLGKTNMDEFA-MGSANITSCF----GNVISPWKANDDNADLVPGGSSGGSAAAVSGFMASAALGSDTGGSVRQPASFTGLVGFKPTYGRCSRYGMISFASSLDQAGIFTRSVLDSSIMLEAMMGFDEKD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_METTH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanobacterium thermoautotrophicum GN=gatA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.249e-17
Identity = 68/237 (28.69%), Postives = 115/237 (48.52%), Query Frame = 1
Query:  154 KQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVN-PDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAAS 861
            K + LT+ + +E +L  I   N  ++  +EV   +A+ +A++ D   ++ +      L G+ I +K NI  +D  N +A S  L       DA V+ ++++   II+G  ++ E++   SS   S F    G   NP      P              +  ++LG++T GSI  P+S   V+G KPT G  SR G++ +    D +GP+   V+  +  LD I+G+D  DP T  +S
Sbjct:   14 KNHGLTASENLEKFLKRIEAKNDDINAFLEVRGEEAIKRAEEID--ARIASGKETGKLAGLVIGVKSNINVED-FNVSAASKTLENYTGSYDATVIRRIKEEDGIIIGMTNMDEFAA-GSSTETSFF----GPTDNPAAPGRIPGGSSGGSAAAVAAGMCDLALGSDTGGSIRNPASHCGVMGFKPTYGAVSRQGLLDLAMSFDQIGPLAADVSGISLALDVISGYDPADPTTLDSS 242          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_LACF3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.249e-17
Identity = 79/238 (33.19%), Postives = 113/238 (47.48%), Query Frame = 1
Query:  130 IKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA-LSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            I  L       K+++ +L +     I   +  +   + +N +A L QA  A+ ++   A   L  L GIP+ +KDNI TK  + TTA S  L       DA VV KL  AG I +GK +L E++   SS   S F       KNP+ L+  P                  +LG++T GSI  P+S    VG+KPT G  SR G+I      D +G + ++V D A ++ AIAG D  D
Sbjct:    8 ISGLHADLVAKKVSATELTKAAFDRIKATDDQVGAFLALNEEAALKQA--AELDQAGIAEDQL--LAGIPLAVKDNIVTKG-LTTTAASKILENFKPVYDATVVEKLNAAGVINVGKVNLDEFA-MGSSTENSAFKTT----KNPWDLTRVPGGSSGGSAAAVAAGDVLGALGSDTGGSIRIPASFTGTVGMKPTYGRVSRWGLIAFGSSFDQIGWLTQSVKDNAILMSAIAGKDDRD 235          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CAMFF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.249e-17
Identity = 64/171 (37.43%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  328 GIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            G+PI +KDNI  K+  + T+ S  L G V P  A VV KL KAG    G+ ++ E++    S   S F G+     NP   +  P              LA  +LG++T GSI  P++    VG KPT G  SR G+   +   D +GPI R+V DAA + D IAG D  D
Sbjct:   50 GVPIAIKDNIQVKN-WSITSCSKILQGYVAPYHATVVEKLLKAGLAPFGRTNMDEFA--MGSTTESSFYGKT---LNPLDHTRVPGGSSGGSAAAVSAGLAIAALGSDTGGSIRQPAAFCGCVGFKPTYGRVSRYGLGAYSSSLDQIGPITRSVEDAALLYDIIAGHDPKD 214          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CAMLR1.319e-1731.50Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BARBK1.319e-1731.56Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_RICFE1.722e-1729.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_MYCGE1.722e-1731.12Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_EHRRW1.722e-1731.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=E... [more]
GATA_STRA32.249e-1730.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_RICCN2.249e-1729.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_METTH2.249e-1728.69Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_LACF32.249e-1733.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_CAMFF2.249e-1737.43Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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