CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ARCB4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Arcobacter butzleri (strain RM4018) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.249e-17
Identity = 60/171 (35.09%), Postives = 85/171 (49.71%), Query Frame = 1
Query:  328 GIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            GIPI +KDNI  K+    T  S  L G + P +A V+ KL KAG    G+ ++ E++   S++     S   G+  NP      P              +A  +LGT+T GSI  P++    VG+KPT G  SR G+   +   D  GPI + V DAA + D I+G+D  D
Sbjct:   49 GIPIAIKDNINVKN-WEITCSSNILKGYISPYNATVIEKLEKAGLSPFGRTNMDEFAMGSSTE-----SSCYGKTLNPIDNEKVPGGSSGGSAAAVAGGIAIAALGTDTGGSIRQPAAYCGCVGMKPTYGRVSRYGITAYSSSLDQCGPITQNVEDAAILYDIISGYDPMD 213          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_RICAE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rickettsia africae (strain ESF-5) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 72/247 (29.15%), Postives = 114/247 (46.15%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ D     K    TS +L+  ++ +I +   L   V +    AL QA+ AD      A  + R L GIP   KD   TK  + TTA S  L   +   ++ V   +   G ++LGK ++ E++   S+   S F    G   +P+  + D     P              +A+ +LG++T GS+  P+S   +VG KPT G  SR G+I      D  G   R+V D++ +L+A+ GFD  D
Sbjct:    4 LNKLTVADSIKGLKNKDFTSTELIGAHIKQIEKHRNLNAYVTDTFDLALKQAEAADQNY---AQNNARTLEGIPFAAKDLFCTKG-IRTTACSNILKNFIPNYESSVTQNIFDKGGVMLGKTNMDEFA-MGSANITSCF----GNVISPWKANDDNADLVPGGSSGGSAAAVSGFMASAALGSDTGGSVRQPASFTGLVGFKPTYGRCSRYGMISFASSLDQAGIFTRSVLDSSIMLEAMMGFDEKD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_MYCPN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycoplasma pneumoniae GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 65/173 (37.57%), Postives = 86/173 (49.71%), Query Frame = 1
Query:  322 LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            L+ IP +LKDNIATK  + TT GS  L   + P  A V   L  +GA+++GKA+L E+     +   SGF    G   +P+  +  P              +   S+GT+T  S+  P+S  ++VG KPT GL SR GV P  P  D VG   R V D A V D I   D  D
Sbjct:   60 LNNIPFVLKDNIATKGIV-TTGGSRFLEDYIPPFSATVFELLNNSGALLVGKANLDEFG-LGGTGLHSGF----GFVHHPWNETLIPGGSSSGSAYAVARGIVPFSIGTDTGDSVRRPASICNIVGFKPTYGLISRNGVYPYAPSLDHVGIFARYVYDVALVSDEIIKHDKAD 226          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_METSB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 77/247 (31.17%), Postives = 118/247 (47.77%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSR-----QLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGF----SGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            T+ DL LA  ++ L ++     +LV+  L EI +   L   + E    AL+ A+ +D      A G    L G+P+ +KD   T+  + TTA S+ L G     ++ V   L + GA++LGK +L E++   SS   S F    S    +G +  ++   P              L   +  T+T GSI  P++    VG+KPT G  SR G++      D  GPI RTV DAA ++ ++AG D  D
Sbjct:    3 TLTDLTLAEARDALLNKDFSAVELVKAQLAEIEQARALNAFIKETPEKALAMAEASDARI---ARGEAGPLEGVPLGIKDLYCTEG-VETTAASHILEGFKPAYESTVSANLWRDGAVMLGKLNLDEFA-MGSSNETSYFGPVVSPWRRKGSDARIV---PGGSSGGSAAAVAARLCFGATATDTGGSIRQPAAFTGTVGIKPTYGRCSRWGIVAFASSLDQAGPIARTVRDAAILMRSMAGHDPKD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_HELP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Helicobacter pylori (strain P12) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 69/199 (34.67%), Postives = 97/199 (48.74%), Query Frame = 1
Query:  274 KADYERKVKA--------AGSLRGLH--GIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            K + + KV+A        A SL G    G+PIL+KDNI+ K     T  S  L G V P  A V+  L + G    G +++ E++   +++     S   G  KNP   +  P              LA  +LG++T GSI  P+S    VGLKPT G  SR G+I      D +GPI + V DA+ + DAI+G D+ D
Sbjct:   19 KNEIDAKVRASDLNAYIKAPSLNGASAKGVPILIKDNISVKG-WEITCSSKILEGYVAPYHASVMENLHQNGMAGFGLSNMDEFAMGSTTE-----SSCYGITKNPRDKNRVPGGSSGGSAAAVAGGLAVAALGSDTGGSIRQPASYCGCVGLKPTYGRVSRYGLIAYCSSFDQIGPITQNVEDASILFDAISGHDNKD 211          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CHLPD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium phaeobacteroides (strain DSM 266) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 73/239 (30.54%), Postives = 112/239 (46.86%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +DL+ +    + T  ++ + YL  I R       +   +  ALS+A   D  R+    G+   L G+P+ +KDNI+ K    T A S  L       DA V+ +L    A+ +GK ++ E++   SS   S F    G   NP+  +  P              LA V+LG++T GS+  P+    +VGLKPT G  SR G++      D +G + R   DAA VL  +AG D  D
Sbjct:    4 SSYQDLRSSLLAGQTTCEEVTKSYLERIDRHCDDNIFLAVFHEQALSRARSLD--RRFSEGGTPGLLFGMPMAIKDNISIKGARLTCA-SRILENYESVYDATVIERLLNEDAVFIGKTNMDEFA-MGSSNENSAF----GPVANPFDKTRVPGGSSGGSAAAVAAGLALVALGSDTGGSVRQPAGFCDIVGLKPTYGRISRYGLVAFASSFDQIGVLARNSDDAALVLGVMAGADERD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CHLL2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 71/239 (29.71%), Postives = 110/239 (46.03%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++ +DL+      ++T  ++V  YL  I R       +   +  A+ +A K D  +K+   G    L G+P+ +KDNI+ K     T  S  L       DA  V +L    A+ LGK ++ E++   SS   S F    G   NP+  +  P              LA  +LG++T GS+  P+    +VGLKPT G  SR G++      D +G + R   DA+ VL  +AG D +D
Sbjct:    4 SSYQDLRSELISRRITCEKVVLDYLERIDRHRDDNIYITVFHEQAVEKARKLD--KKLSEGGLPGKLFGMPMAIKDNISIKGA-GLTCASRILENYESVYDATAVQRLEAEDAVFLGKTNMDEFA-MGSSNENSAF----GAVPNPFDKTRVPGGSSGGSAAAVAAGLALAALGSDTGGSVRQPAGFCDIVGLKPTYGRISRYGLVAFASSFDQIGVLARNCDDASLVLGIMAGKDEHD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CAMJR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni (strain RM1221) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 58/171 (33.92%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  328 GIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            G+P+ +KDNI+ K     T+ S  L G + P DA V+V L+  G    G+ ++ E++   SS A S +    G+  NP      P              LA  SLG++T GS+  P++    VG KP+ G  SR G+   +   D +G + + V DAA + DAIAG+D  D
Sbjct:   50 GVPVAIKDNISVKG-WELTSASKILQGYIAPYDASVIVNLKANGFSPFGRCNMDEFA-MGSSTASSYY----GKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMD 214          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CAMJ8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 58/171 (33.92%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  328 GIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            G+P+ +KDNI+ K     T+ S  L G + P DA V+V L+  G    G+ ++ E++   SS A S +    G+  NP      P              LA  SLG++T GS+  P++    VG KP+ G  SR G+   +   D +G + + V DAA + DAIAG+D  D
Sbjct:   50 GVPVAIKDNISVKG-WELTSASKILQGYIAPYDASVIVNLKANGFSPFGRCNMDEFA-MGSSTASSYY----GKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPAAFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMD 214          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BRASO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bradyrhizobium sp. (strain ORS278) GN=gatA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 81/243 (33.33%), Postives = 116/243 (47.74%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPR-DAGVVVKLRKAGAIILGKASLSEW----SNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            T+ + +        TS +L + +L  I     L   V+E    A + A  AD  R  K  G    L GIP+ +KD  ATKD + TTA S  +LG+ VP  ++ V  +L + GA++LGK +  E+    SN  S   P G   R  +G N  ++   P              L   +  T+T GSI  P++  + VG+KPT G  SR G++      D  GPI RT  DAA +L ++AG D  D
Sbjct:    8 TLAEARKGLADKTFTSLELTDAHLKAIEAARALNAFVMETPDQARAMARDAD-ARIGKGEGG--PLAGIPLGIKDLFATKD-VRTTACS-KILGNFVPTYESTVTAQLWRDGAVMLGKLNNDEFAMGSSNETSCFGPVGNPWRR-EGSNTTLV---PGGSSGGSASAVAALLCMGATATDTGGSIRQPAAFTATVGIKPTYGRCSRWGIVAFASSLDQAGPIARTTRDAAILLRSMAGHDPKD 241          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_ARCB42.249e-1735.09Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_RICAE2.938e-1729.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_MYCPN2.938e-1737.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_METSB2.938e-1731.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_HELP22.938e-1734.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_CHLPD2.938e-1730.54Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLL22.938e-1729.71Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CAMJR2.938e-1733.92Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CAMJ82.938e-1733.92Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_BRASO2.938e-1733.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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