CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_STRTD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.837e-17
Identity = 72/239 (30.13%), Postives = 114/239 (47.70%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA-LSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI++L       ++++ +L +  + +I      ++  + V  +A L+QA+  D E+ + A   L G   IP  +KDNI+T D + TTA S  L       DA  V   +    I++GK ++ E++        SG +   G  KN +  S  P                 +SLG++T GSI  P++ N +VGLKPT G  SR G+I      D +G   +TV + A +L+ IA  D  D
Sbjct:    7 TIEELHNLLVSKEISATELTQATIDDIKAREEAVNAFVTVAEEAALAQAEAID-EKGIDADNLLSG---IPFAVKDNIST-DGILTTAASKMLYNYEPIFDATAVANAKAKDMIVIGKTNMDEFA-----MGGSGETSYYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGTFSQTVKENAQLLNVIASEDAKD 235          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_STRT2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.837e-17
Identity = 70/238 (29.41%), Postives = 110/238 (46.22%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI++L       ++++ +L +  + +I      ++  + V  +A     KA  E+ + A   L G   IP  +KDNI+T D + TTA S  L       DA  V   +    I++GK ++ E++        SG +   G  KN +  S  P                 +SLG++T GSI  P++ N +VGLKPT G  SR G+I      D +G   +TV + A +L+ IA  D  D
Sbjct:    7 TIEELHNLLVSKEISATELTQATIDDIKAREEAVNAFVTVAEEAALAQAKAIDEKGIDADNLLSG---IPFAVKDNIST-DGILTTAASKMLYNYEPIFDATAVANAKAKDMIVIGKTNMDEFA-----MGGSGETSYYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGTFSQTVKENAQLLNVIASEDAKD 235          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_STRT1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus thermophilus (strain CNRZ 1066) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.837e-17
Identity = 70/238 (29.41%), Postives = 110/238 (46.22%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI++L       ++++ +L +  + +I      ++  + V  +A     KA  E+ + A   L G   IP  +KDNI+T D + TTA S  L       DA  V   +    I++GK ++ E++        SG +   G  KN +  S  P                 +SLG++T GSI  P++ N +VGLKPT G  SR G+I      D +G   +TV + A +L+ IA  D  D
Sbjct:    7 TIEELHNLLVSKEISATELTQATIDDIKAREEAVNAFVTVAEEAALAQAKAIDEKGIDADNLLSG---IPFAVKDNIST-DGILTTAASKMLYNYEPIFDATAVANAKAKDMIVIGKTNMDEFA-----MGGSGETSYYGATKNAWDHSKVPGGSSSGSAAAVASGQVRLSLGSDTGGSIRQPAAFNGIVGLKPTYGTVSRFGLIAFGSSLDQIGTFSQTVKENAQLLNVIASEDAKD 235          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_STRGC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.837e-17
Identity = 78/239 (32.64%), Postives = 117/239 (48.95%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI++L     + ++++ +L +  L +I      +   I V+ + AL++A   D     K   +   + GIP+ +KDNI+TK  + TTA S  L       DA  V KL     II+GK ++ E++   SS+  S F       KN +  S  P                 +SLG++T GSI  P+S N VVGLKPT G  SR G+I      D +GP  +TV + A +L+ I+G D  D
Sbjct:    7 TIEELHDLLVKKEISAVELTQATLADIKEREGAVDSFITVSEEEALAKAAALD----AKGIDADNLMSGIPLAVKDNISTKGIL-TTAASKMLYNYKPIFDATSVEKLYGKDMIIVGKTNMDEFAMGGSSEN-SYFKTT----KNAWDGSKVPGGSSGGSATAVASGQVRLSLGSDTGGSIRQPASFNGVVGLKPTYGRVSRFGLIAFGSSLDQIGPFSQTVKENAQLLNVISGNDPKD 235          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_RHOP5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Rhodopseudomonas palustris (strain BisA53) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.837e-17
Identity = 77/243 (31.69%), Postives = 110/243 (45.27%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSL-----GTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            T+ + +    +   T+ QL + +L  I     L   V+E    A + A  AD      AAG L GL   P+ +KD  AT+  + TTA S  L     P ++ V  +L + GA++LGK +  E++   SS   S F    G   NP+                   +  A  L      T+T GSI  P++    VG+KPT G  SR G++      D  GPI RTV DAA +L ++AG D  D
Sbjct:    8 TLAEARDGLAKKSFTALQLTDAHLAAIEAARVLNAYVLETPEQARAMAKAADERIARGAAGPLEGL---PLGIKDLFATQG-VRTTACSKILGEFSPPYESTVSAQLWRDGAVLLGKLNNDEFA-MGSSNETSCF----GPVVNPWRREGSDAKLVPGGSSGGSASAVAAGLCLGATATDTGGSIRQPAAFTGTVGIKPTYGRCSRWGIVAFASSLDQAGPIARTVRDAAILLRSMAGHDPKD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_JANSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Jannaschia sp. (strain CCS1) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.837e-17
Identity = 76/243 (31.28%), Postives = 116/243 (47.74%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVL-----SADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI D + A ++ ++TS  L +  L  I + + L   V +    AL +A  AD      A G    + GIP+ +KD   T+  + + A S  L G     ++ V  KLR AGA++LGK ++ E++   SS   S +    G   NP+       +  P             +L   + GT+T GSI  P++   +VGLKPT G  SR G++      D  GP+ +TV DAA +  A+ G+D  D
Sbjct:    8 TIADARDALRKGEVTSVDLTQACLSAIDQADALGTFVHKTPDLALERAKAADARI---AEGDAPDMCGIPVGIKDLFCTEG-VPSQAASRILDGFKPEYESTVSGKLRDAGAVMLGKLNMDEFA-MGSSNETSVY----GNAVNPWRAGNSDAALTPGGSSGGSASAVAGDLCLAATGTDTGGSIRQPAAFTGIVGLKPTYGRCSRWGIVAFASSLDQAGPMTKTVRDAAIMGRAMMGYDAKD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BART1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.837e-17
Identity = 77/243 (31.69%), Postives = 108/243 (44.44%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGL-HGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEW----SNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI   + A    KL + +L E YL  I   NP L+  + +  +   QA K   E   + A   RGL  GIP+ +KD  AT   ++T A S  L G     ++ +   L + GA++LGK ++ E+    SN  S   P     R        V    P              + A +  T+T GSI  P++    VG+KPT G  SR GV+      D  GPI R V D A +L ++A FD  D
Sbjct:    8 TIAQARDALITKKLKATELTEAYLKAIELANPTLNAYVTITAE---QARKMAAESDRRLAKGERGLLEGIPLGIKDLFATHG-VHTQACSNILDGFKPNYESTITANLWQDGAVMLGKLNMDEFAMGSSNETSYYGPVISPWRKKDSNEKLV----PGGSSGGSAAAVAAQICAGATATDTGGSIRQPAAFTGTVGIKPTYGRCSRWGVVAFASSLDQAGPIARDVRDCAILLRSMASFDEKD 242          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ROSDO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.011e-17
Identity = 76/250 (30.40%), Postives = 119/250 (47.60%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHR---LNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + E  + + + A +  + TS+ L E  L  I     LN  +H   ++   AL +A  AD      A G+   + G+PI +KD   TK  + + AGS  L G +   ++ V   L  AGA++LGK ++ E++   SS   S +    G   NP+    D     P             +L   + GT+T GSI  P++    VG+KPT G  SR G++      D  GP+ ++V DAA +L+A++G D  D
Sbjct:    4 LNELGLAEARDALRAGETTSKDLTEACLTAIEEAGVLNAFVHHTADL---ALERAAAADARL---AQGAAPAMCGLPIGMKDLFCTKG-VASQAGSRILEGFLPEYESTVSQNLVDAGAVMLGKLNMDEFA-MGSSNETSIY----GDVINPWRRKDDEKPLTPGGSSGGSAAAVAADLCLAATGTDTGGSIRQPAAFTGTVGIKPTYGRCSRWGIVAFASSLDQAGPMTKSVRDAAIMLEAMSGHDPKD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_OLICO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.011e-17
Identity = 74/243 (30.45%), Postives = 110/243 (45.27%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            T+ D +        T+ +L + +L  +     L   V+E    A + A +AD      A G    L GIP+ +KD  AT+D +  TA S  L     P ++ +  +L + GA++LGK +  E++   SS   S F    G   NP+          P              L   + GT+T GSI  P++   +VG+KPT G  SR GV+      D  GP  RTV D+A +L ++AG D  D
Sbjct:    8 TLADAKEGLAAKSFTALELTDAHLAAMESARVLNAYVLETPDKARAMAKEADTRI---AKGERSNLLGIPLGIKDLFATRD-VRLTACSKILDDFKPPYESTITSQLWRDGAVLLGKLNNDEFA-MGSSNETSAF----GNVINPWRREGSDTALVPGGSSGGSAAAVAAGLCLGATGTDTGGSIRQPAAFTGIVGIKPTYGRCSRWGVVAFASSLDQAGPFARTVRDSAILLRSMAGHDPKD 241          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_HELPH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Helicobacter pylori (strain HPAG1) GN=gatA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.544e-17
Identity = 68/199 (34.17%), Postives = 96/199 (48.24%), Query Frame = 1
Query:  274 KADYERKVKA--------AGSLRGLH--GIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            K + + KV+A        A SL G    G+PIL+KDNI+ K     T  S  L G V P  A V+  L +      G +++ E++   +++     S   G  KNP   +  P              LA  +LG++T GSI  P+S    VGLKPT G  SR G+I      D +GPI + V DA+ + DAI+G D+ D
Sbjct:   19 KNEIDAKVRASDLNAYIKAPSLNGASAKGVPILIKDNISVKG-WEVTCSSKILEGYVAPYHASVIENLHQNSMAGFGLSNMDEFAMGSTTE-----SSCYGITKNPRDKNRVPGGSSGGSAAAVAGGLAVAALGSDTGGSIRQPASYCGCVGLKPTYGRVSRYGLIAYCSSFDQIGPITQNVEDASILFDAISGHDNKD 211          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_STRTD3.837e-1730.13Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRT23.837e-1729.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRT13.837e-1729.41Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRGC3.837e-1732.64Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_RHOP53.837e-1731.69Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_JANSC3.837e-1731.28Glutamyl-tRNA(Gln) amidotransferase subunit A OS=J... [more]
GATA_BART13.837e-1731.69Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_ROSDO5.011e-1730.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_OLICO5.011e-1730.45Glutamyl-tRNA(Gln) amidotransferase subunit A OS=O... [more]
GATA_HELPH6.544e-1734.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
back to top