CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSEA7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas aeruginosa (strain PA7) GN=gatA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.651e-26
Identity = 84/243 (34.57%), Postives = 120/243 (49.38%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ ++  A    + ++ +L    LG I +L+P L+  I V  D A++QA  AD  R   A G    L G PI  KD   T+  + T+ GS  L   V P DA VV KL  AG + LGK ++ E++   S++     S   G  KNP+ L   P              L   + GT+T GSI  P++  ++ G+KPT G  SR G+I      D  GP+ RT  D A +L A+AGFD  D
Sbjct:    2 LHQLTLAEIARALADKRFSAEELTRTLLGRIRQLDPQLNSFISVTDDLAIAQAKAADERR---ANGENGALLGAPIAHKDLFCTQG-VRTSCGSKMLDNFVSPYDATVVEKLAAAGTVTLGKLNMDEFAMGSSNQ-----SSHYGAVKNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALMLGAMAGFDPKD 235          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_METCA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methylococcus capsulatus GN=gatA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.651e-26
Identity = 87/239 (36.40%), Postives = 121/239 (50.63%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            T+ +L    ++ + +S +L + +L  I RL+P L+  I   P+ AL+QA  AD ER  K  G    L GIPI  KD   TK  + T+ GS  L   V P DA VV +   AGA++LGK ++ E++   SS   S +    G  KNP+  +  P              L   + GT+T GSI  P++   + GLKPT G  SR G+I      D  GP+ RT  D A +L  +AGFD  D
Sbjct:    5 TLAELAAGLERREFSSVELTQAHLARIERLDPALNSFITTTPEIALAQARAAD-ERLAK--GEAGPLTGIPIAQKDIFCTKG-VRTSCGSRMLDSFVSPYDACVVERFNAAGAVMLGKLNMDEFA-MGSSNETSYY----GPVKNPWNTATVPGGSSGGSAAAVAARLVPGATGTDTGGSIRQPAAFCGITGLKPTYGRVSRWGMIAFASSLDQAGPMARTAEDCAIMLQIMAGFDERD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CYAP4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=gatA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.651e-26
Identity = 80/240 (33.33%), Postives = 127/240 (52.92%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A+I++L       + +++++ +  L +I +L P +H  + +  + AL+QA++ D  +++     +  L GIPI +KDN+ TK  + TT GS  L G + P ++ V  +L  AGA+++GK +L E++   SS   S +        NP+ L   P                 ++LG++T GSI  P+S   VVGLKPT GL SR G++      D +GP    V DAA +L AIAG D  D
Sbjct:    2 ASIRELHQQLVSKERSAKEITQDALEKIQQLEPKVHAFLTLTAEQALAQAERVD--QQIATGTEIGLLAGIPIAIKDNLCTKG-IPTTCGSKILQGFIPPYESTVTSRLAAAGAVMVGKTNLDEFA-MGSSTENSAYQLTA----NPWDLQRVPGGSSGGSAAAVAAGETLIALGSDTGGSIRQPASFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFATNVEDAALLLGAIAGHDPQD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_SYNY3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechocystis sp. (strain PCC 6803) GN=gatA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.462e-26
Identity = 83/238 (34.87%), Postives = 126/238 (52.94%), Query Frame = 1
Query:  130 IKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVN-PDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            I+ L       ++++  + +  L  I  ++  L   ++V  P A++QA+K D +  + A   +  L GIPI +KDN+ TK  + TT  S  L G V P ++ V  KL+KAGA+++GK +L E++   SS   SG+        NP+ L+  P             +   ++LG++T GSI  P+S   VVG+KPT GL SR G++      D +GP  R V DAA +L AIAG D  D
Sbjct:    4 IRALHQQLIDQEISAVAVAQASLARIEAVDDRLKSFLQVTAPQAIAQAEKVDAQ--IAAGEPIGLLAGIPIGIKDNLCTKGIV-TTCASQILRGFVPPYESTVTEKLQKAGAVMVGKTNLDEFA-MGSSTENSGYQVTA----NPWDLTRVPGGSSGGSAAAVAADECLIALGSDTGGSIRQPASLCGVVGMKPTYGLVSRFGLVAYASSLDQIGPFARRVEDAAILLQAIAGHDSRD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_HAHCH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Hahella chejuensis (strain KCTC 2396) GN=gatA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.462e-26
Identity = 85/239 (35.56%), Postives = 120/239 (50.21%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI ++    +  + +SR++ + YL  I RLNP L+  I V  D ALSQA++AD       AG    L+G+P+  KD   T+  + TT GS  L   V P ++ V  K   AGA+ LGK ++ E++   SS   S F    G  +NP+     P              L A + GT+T GSI  P++   + GLKPT G  SR G++      D  GP  RT  DAA +L+ +AG D  D
Sbjct:    5 TISEIISGLRDKQFSSREITQDYLARIKRLNPELNCFITVTEDLALSQAEQADARLN---AGQTSVLNGVPLAHKDVFCTEG-VTTTCGSRMLEKFVPPYESTVTRKFIDAGAVTLGKTNMDEFA-MGSSNENSYF----GPVRNPWDTERAPGGSSGGSAAAVAAGLCAAATGTDTGGSIRQPAAFCGLTGLKPTYGRVSRLGMVAFASSLDQGGPFARTAEDAALLLNVMAGHDPMD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_GRABC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=gatA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.462e-26
Identity = 85/248 (34.27%), Postives = 128/248 (51.61%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSAD-----PCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + TI + +   +  + ++R+L + +LG I  LNP L+  I V PD A +QA  AD   +V A+G    L GIP+  KD   ++  + TTAGS  L   V P ++ V  ++ + GA+ILGKA+L E++   S+   S +    G  +NP+    D     P             +LA  + GT+T GSI  P+S   + G+KPT G  SR G++      D  GP  RTV D A +L ++AG D  D
Sbjct:    4 LTDLTIAEARDGLRAKRFSARELTDAHLGAIEALNPRLNAYITVTPDQARAQAAAAD---RVLASGEAGALTGIPVASKDMFCSEG-IRTTAGSRILENFVPPYESAVTERMLRDGAVILGKANLDEFA-MGSANLTSAY----GPVENPWKRHDDDAVLVPGGSSGGSAAAVAAHLALGATGTDTGGSIRQPASYCGIAGIKPTYGRCSRWGIVAYASSLDQAGPFARTVRDNAILLRSMAGHDPRD 242          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSEAE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas aeruginosa GN=gatA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.522e-26
Identity = 83/243 (34.16%), Postives = 120/243 (49.38%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ ++  A    + ++ +L    LG I +L+P L+  I +  D A++QA  AD  R   A G    L G PI  KD   T+  + T+ GS  L   V P DA VV KL  AGA+ LGK ++ E++   S++     S   G  KNP+ L   P              L   + GT+T GSI  P++  ++ G+KPT G  SR G+I      D  GP+ RT  D A +L  +AGFD  D
Sbjct:    2 LHQLTLAEIARALADKQFSAEELTRTLLGRIRQLDPQLNSFISITDDLAIAQAKAADERR---ANGENGALLGAPIAHKDLFCTQG-VRTSCGSKMLDNFVSPYDATVVEKLTAAGAVTLGKLNMDEFAMGSSNQ-----SSHYGAVKNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALMLGVMAGFDPKD 235          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_MAGSM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Magnetococcus sp. (strain MC-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.522e-26
Identity = 84/243 (34.57%), Postives = 123/243 (50.62%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + E T+++        +++S +L +  L +I + NP ++  + V+ + AL+ A  AD      AAG+   L GIPI  KD   T D M TT  S  L   + P DA +   LR+AGA+ILGK +L E++   SS   S F    G  +NP+     P             N+A  + GT+T GSI  P+S  ++ GLKPT G  SR G+I      D  GP+ RT  DAA +L+ +  +D  D
Sbjct:    3 LNELTLREAADKLATKEISSVELTQACLDQIAKHNPTINAFVTVDAEKALAAAQAADARI---AAGNGAPLTGIPIAHKDIFNTTD-MRTTCSSRMLENFIPPFDATITTHLRQAGAVILGKTNLDEFA-MGSSTETSYF----GASRNPWDTQRTPGGSSGGSSAAIAANMAICATGTDTGGSIRQPASLTNLTGLKPTYGRCSRYGIIAFASSLDQAGPMTRTAEDAAMLLNVMVSYDPKD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ROSS1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Roseiflexus sp. (strain RS-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.905e-26
Identity = 82/243 (33.74%), Postives = 124/243 (51.03%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ D + A  + ++TS +L +  L  I  + P +   + ++ + A +QA  AD  R   AAG    L GIP+ +KD I+T+  + TT  S  L   V   DA  V +L+ AGA+++GK +  E++   SS   S F     Q +NP+ L   P               A  +LGT+T GSI  P++   + GLKPT G  SR G++      D +GP+ RTV D A +L  IAG D +D
Sbjct:    4 LHQLTLSDAREALMRGEITSVELTDALLARIAAVEPQVRAFLTIDAEGARAQAQAADARR---AAGDTSPLLGIPLGIKDVISTQG-VRTTCASKMLENYVPVYDATAVARLKAAGAVLIGKLNCDEFA-MGSSTENSAFQ----QTRNPWNLERVPGGSSGGSAAAVAAGEAPATLGTDTGGSIRQPAALCGITGLKPTYGRVSRYGLVAFASSLDQIGPMARTVRDCAIILRVIAGADPFD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CHRVO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chromobacterium violaceum GN=gatA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.905e-26
Identity = 84/241 (34.85%), Postives = 124/241 (51.45%), Query Frame = 1
Query:  121 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +AT+K L       +++S +L   YL  I  LNP L+ ++ V+ +  L++A  AD      AAG  R L G+P++ KD +  +    T+ GS  L   V P  A VV +   AG + LG+A++ E++   SS   S +    G  KNP+ L+A P              LA V+  T+T GSI  P+S   V G+KPT G+ SR G++      D  GPI +T  D A +L+ +AGFD  D
Sbjct:    3 QATLKQLSQQLAAKQVSSVELASQYLDRIEALNPQLNAIVTVDREKTLAEARAADARL---AAGDARALTGVPLVHKD-LFCQQGWKTSCGSRMLDNFVSPYSAHVVEQCAAAGMVTLGRANMDEFA-MGSSNENSFY----GAVKNPWDLNAIPGGSSGGSAAAVAARLAPVATATDTGGSIRQPASHCGVTGIKPTYGVVSRYGMVAYASSLDQGGPIAQTAEDCALMLNVMAGFDARD 234          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_PSEA72.651e-2634.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_METCA2.651e-2636.40Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CYAP42.651e-2633.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_SYNY33.462e-2634.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_HAHCH3.462e-2635.56Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_GRABC3.462e-2634.27Glutamyl-tRNA(Gln) amidotransferase subunit A OS=G... [more]
GATA_PSEAE4.522e-2634.16Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_MAGSM4.522e-2634.57Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_ROSS15.905e-2633.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_CHRVO5.905e-2634.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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