CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ALKMQ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alkaliphilus metalliredigens (strain QYMF) GN=gatA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.905e-26
Identity = 82/243 (33.74%), Postives = 124/243 (51.03%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEV-NPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            I E TI D++  + Q + T + +V+ Y+  I  L+  ++  I +    AL +A  A  + K+     +  L GIP+ +KDN+ T+  + T+  S  L   + P DA +V KLR AGAII+GK ++ E++   SS   S F       KNP+ L+  P               A +++G++T GSI  P++    VGLKPT GL SR G+I      D +GP  +TV D A  L  + G D  D
Sbjct:    3 IEEMTIMDIRKGYVQKQFTVKDVVQGYIDRIKELDGKINAFITLCEESALMEA--AVLDEKLSRGEEIGLLGGIPVAIKDNMCTQG-IKTSCASEMLADFIPPYDATIVKKLRAAGAIIIGKTNMDEFA-MGSSTENSAFKVT----KNPWDLTKVPGGSSGGSAAALAAGFAPLTIGSDTGGSIRQPAAFCGTVGLKPTYGLVSRFGLIAFASSLDQIGPFTKTVKDCALSLQVMQGNDPLD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_TRIEI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Trichodesmium erythraeum (strain IMS101) GN=gatA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.713e-26
Identity = 86/240 (35.83%), Postives = 126/240 (52.50%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A+I D+       + ++ ++ +  L  I++L P L   I V  + A++QA + D   K+ A   +  L GIPI +KDNI T+  + TT GS  L   + P ++ V  KL  AGAIILGK +L E+    SS   S +        NP+  +  P               + V+LG++T GSI  P+S   VVG+KPT GL SR G++      D +GP+ RTV D+A +L AIAG+D  D
Sbjct:    2 ASISDIHQQLISKQRSAVEITQEALENINQLEPKLKSFICVTAEKAIAQARQVD--AKIAAGEKIGLLTGIPIAVKDNICTRG-IPTTCGSKILQNFIPPYESTVTQKLVDAGAIILGKTNLDEFG-MGSSTENSAYQVT----TNPWDNTRVPGGSSGGSAAAVASAESVVALGSDTGGSIRQPASFCGVVGIKPTYGLVSRYGLVAYASSMDQIGPLSRTVKDSAILLQAIAGYDPKD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_COREF (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Corynebacterium efficiens GN=gatA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.713e-26
Identity = 85/241 (35.27%), Postives = 123/241 (51.04%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA-LSQADKADYERKVKAAGSL--RGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            T  +L       ++TSR++ + +L  I+ ++  +H  + V  +A L+ AD  D   K   AG      L G+P+ LKD + T D   TTA S  L G + P DA V  KLR+AG  ILGK ++ E++   SS   S +    G  +NP+ L   P               A +++GT+T GSI  P++  + VG+KPT G  SR G+I      D VGP  RTV D A + + IAG D +D
Sbjct:   18 TAAELAGLIHSREVTSREVTQAHLDRINEVDGEIHAFLHVGEEAALAAADAVD---KALDAGEAPASALAGVPLALKDALVTTDAP-TTAASKILEGYMSPYDATVTRKLREAGIPILGKTNMDEFA-MGSSTENSAY----GATRNPWDLERTPGGSGGGSSAALASGEAPLAIGTDTGGSIRQPAALTNTVGVKPTYGTVSRYGLIACASSLDQVGPTARTVLDTALLHEVIAGHDMFD 249          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_NITOC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=gatA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.007e-25
Identity = 84/244 (34.43%), Postives = 122/244 (50.00%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRA 855
            ++ +L  A K  + +S +L + YL  I RLN  L+  I V+ + AL QA  AD    +  +G    + GIP+  KD   T   + T+ GS  L     P +A VV +L+ AGA++LGK ++ E++   SS   S +    G  KNP+     P              L   + GT+T GSI  P++   + GLKPT G  SR G+I      D  GP+ RT  DAA +L+ +AGFD  D  + A
Sbjct:    5 SLAELASALKAREFSSEELTQHYLKRIERLNEDLNSFITVSTEEALKQAKAAD---AILQSGEGSSITGIPLAHKDIFCTTG-VKTSCGSKMLDNFTAPYNATVVSRLKTAGAVMLGKTNMDEFA-MGSSNETSFY----GSVKNPWAHDRVPGGSSGGSAAAVAARLTPAATGTDTGGSIRQPAALCGITGLKPTYGRVSRYGMIAFASSLDQGGPMARTAQDAALLLNVMAGFDERDSTSVA 239          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ALCBS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=gatA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.007e-25
Identity = 83/241 (34.44%), Postives = 124/241 (51.45%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKV-KAAGSLRGL-HGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            T+ +L+        +SR+L E +L  I + +  L+  + V  + AL+QAD AD      +A+ S+ GL  G+PI  KD   T+  + T+ GS  L   + P  A VV K+   GA++LGK ++ E++   SS   S +    G  KNP+ L   P              LA  + GT+T GSI  P++ N++ GLKPT G  SR G+I      D  GP+ ++  D A +L A+AG DH D
Sbjct:    5 TLTELKAGLAAGDFSSRELTEHFLARIKQYDGELNSFVTVTEEQALAQADAADATLATNRASSSVSGLLTGLPIAHKDIFCTEG-VRTSCGSKMLDNFIAPYTATVVEKMAAEGAVMLGKTNMDEFA-MGSSNETSYY----GPVKNPWDLERVPGGSSGGAAACLGARLAPAATGTDTGGSIRQPAALNNITGLKPTYGRVSRWGMIAFASSLDQAGPMAQSAEDCALMLQAMAGHDHRD 239          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_THEEB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermosynechococcus elongatus (strain BP-1) GN=gatA PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.316e-25
Identity = 83/250 (33.20%), Postives = 132/250 (52.80%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPS-GFSGR---------GGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + I++L     + + ++ ++ + YL  I ++ P LH  + V  D AL+QA  A+ ++++ A   +  L GIP+ +KDN+ T   + TT  S  L   V P ++ V  KL+ AGAI++GK +L E++   S++  + GF+           G  G +   ++A  C               A +LG++T GSI  P++   VVGLKPT GL SR G++      D +GP+  TV DAA +L AIAG D  D
Sbjct:    2 SVIQELHRQLVRKERSATEITQAYLDRIAQVEPTLHSFLTVTRDRALAQA--AEVDKRLAAGEEIGLLTGIPLAIKDNLCTYG-VRTTCASKMLEHFVPPYESTVTEKLQAAGAIMVGKTNLDEFAMGSSTENSAFGFTANPWNPERVSGGSSGGSAAAVAAREC---------------AAALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPLAPTVTDAAILLGAIAGHDPKD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_SULSY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=gatA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.316e-25
Identity = 79/244 (32.38%), Postives = 126/244 (51.64%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRA 855
            ++K+L    K  ++   ++VE ++   +++ P +   +    D AL +A K D E  +    ++  L G+PI +KDNI+TKD + TT  S  L   V   DA V+ +L+  G +I GK +L E++   S++  + F  R     NP+ L   P              +A  SLG++T GSI  P++   VVGLKPT G  SR G++      D +GP  RTV D A +++ I+G D  D  +R+
Sbjct:    7 SLKELSDLVKSKEVKPSEIVEAFIERKNQVEPKIKAYVTALDDLALEKAKKRDQE--LTKLENIPDLFGLPIAIKDNISTKD-IKTTCSSKMLENFVPVYDATVIERLKSQGYVITGKTNLDEFAMGSSTENSAFFPTR-----NPWDLERVPGGSSGGSAAVVASGMAPASLGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLVAFASSLDQIGPFGRTVEDVAMIMNVISGKDPKDSTSRS 242          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURXL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia xenovorans (strain LB400) GN=gatA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.316e-25
Identity = 87/243 (35.80%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + E ++ +L+ A    + ++ +L + YL  I   N L +  I+V+PD  L+QA  AD       AG L GL   PI  KD   TK    +TAGS  L     P DA VV +L+ AG + +GK ++ E++   SS   S F    G  +NP+ + A P              LA  + GT+T GSI  P+S + + G+KPT G  SR G+I      D  GP+ R+ AD A +L+A+AGFD  D
Sbjct:    1 MHEKSLTELRAALTARECSAVELAQLYLKRIEAANSL-NAFIQVDPDLTLAQAKAADALLHTGHAGPLVGL---PIAHKDVFVTKG-WRSTAGSKMLSNYESPFDATVVARLQNAGMVCVGKTNMDEFA-MGSSNENSYF----GPVQNPWDVKAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMARSAADCATLLNAMAGFDGRD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_THICR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thiomicrospira crunogena (strain XCL-2) GN=gatA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.718e-25
Identity = 83/239 (34.73%), Postives = 122/239 (51.05%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++K++    +  ++TS  L + YL  I + +  L+  + V P+ A+  A +AD E   +  G L  L GIP+  KD   T D + TT GS  L   + P DA VV   R  G  ILGK ++ E++   SS+     S   G  KNP+ L A P              LA ++ G++T GSI  P+S   + G+KPT G  SR G+I      D  GP+ R+  ++A++LD IAGFD  D
Sbjct:    5 SVKEMSEKLRNKEITSVALTQHYLDRIDQYDGELNAYVTVTPELAMEMARQAD-EMIAEGKGGL--LTGIPVAHKDIFCTLD-VKTTCGSKMLDNFIAPYDAKVVEASRALGMPILGKTNMDEFAMGSSSE-----SSYYGATKNPWDLKAVPGGSSGGSAAVIAAGLAPLATGSDTGGSIRQPASFCGITGIKPTYGAVSRYGMIAYASSFDQGGPMTRSAEESAWLLDVIAGFDERD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSESM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas syringae pv. tomato GN=gatA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.718e-25
Identity = 81/243 (33.33%), Postives = 118/243 (48.56%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ ++     + K +S +L    L  I +L+P L+  I +  D A++QA  AD  R   AAG    L G P+  KD   T+  + T+ GS  L     P DA VV KL  AG + LGK ++ E++   +++     S   G  KNP+ L   P              L   + GT+T GSI  P++  ++ GLKPT G  SR G+I      D  GP+ RT  D A +L  +AGFD  D
Sbjct:    1 MHQMTLAEIARGLAEKKFSSEELTRVLLSRIAQLDPQLNSFISLTEDLAITQAQAADARR---AAGENGPLLGAPLAHKDLFCTQG-IRTSCGSRMLDNFKAPYDATVVSKLASAGTVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLECVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQAGPMARTAEDCALLLQGMAGFDPQD 234          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_ALKMQ5.905e-2633.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_TRIEI7.713e-2635.83Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_COREF7.713e-2635.27Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_NITOC1.007e-2534.43Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_ALCBS1.007e-2534.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_THEEB1.316e-2533.20Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_SULSY1.316e-2532.38Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_BURXL1.316e-2535.80Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_THICR1.718e-2534.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_PSESM1.718e-2533.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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