CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSEAB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=gatA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.718e-25
Identity = 82/243 (33.74%), Postives = 119/243 (48.97%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ ++  A    + ++ +L    LG I +L+P L+  I +  D A++QA  AD  R   A G    L G PI  KD   T+  + T+ GS  L   V P DA VV KL  AGA+ LGK ++ E++   S++     S   G   NP+ L   P              L   + GT+T GSI  P++  ++ G+KPT G  SR G+I      D  GP+ RT  D A +L  +AGFD  D
Sbjct:    2 LHQLTLAEIARALADKQFSAEELTRTLLGRIRQLDPQLNSFISITDDLAIAQAKAADERR---ANGENGALLGAPIAHKDLFCTQG-VRTSCGSKMLDNFVSPYDATVVEKLAAAGAVTLGKLNMDEFAMGSSNQ-----SSHYGAVNNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALMLGVMAGFDPKD 235          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSEA8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas aeruginosa (strain LESB58) GN=gatA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.718e-25
Identity = 82/243 (33.74%), Postives = 119/243 (48.97%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ ++  A    + ++ +L    LG I +L+P L+  I +  D A++QA  AD  R   A G    L G PI  KD   T+  + T+ GS  L   V P DA VV KL  AGA+ LGK ++ E++   S++     S   G   NP+ L   P              L   + GT+T GSI  P++  ++ G+KPT G  SR G+I      D  GP+ RT  D A +L  +AGFD  D
Sbjct:    2 LHQLTLAEIARALADKQFSAEELTRTLLGRIRQLDPQLNSFISITDDLAIAQAKAADERR---ANGENGALLGAPIAHKDLFCTQG-VRTSCGSKMLDNFVSPYDATVVEKLAAAGAVTLGKLNMDEFAMGSSNQ-----SSHYGAVNNPWSLDRVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGIKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALMLGVMAGFDPKD 235          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_NITEU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nitrosomonas europaea GN=gatA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.718e-25
Identity = 84/248 (33.87%), Postives = 126/248 (50.81%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPATRAASE 864
            A+++ L L   + K++S +L   +L  I  LNP L+  I ++ + +L QA+ AD   K+ AAG    L GIPI  KD    +  + TT GS  L   V P DA VV +  +AG + LGK ++ E++   SS   S +    G  KNP+   A P              LA  + G++T GSI  P++   + G+KPT GL SR G+I      D  GP+ ++  D A +L+ + GFD  D  +   +E
Sbjct:    4 ASLRQLSLLLSEKKISSTELTSEFLSRIKALNPDLNAFITIDEEKSLDQANVAD---KMIAAGRSTPLTGIPIAQKDIFCARGWL-TTCGSKMLSNFVSPYDATVVERFDQAGMVNLGKTNMDEFA-MGSSNETSYY----GPVKNPWDRLAVPGGSSGGSACAVAARLAPAATGSDTGGSIRQPAALCGISGIKPTYGLVSRYGMIAFASSLDQGGPMAKSAEDLALLLNTMVGFDERDSTSLQRAE 242          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA1_CLOAB (Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS=Clostridium acetobutylicum GN=gatA1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.718e-25
Identity = 82/248 (33.06%), Postives = 127/248 (51.21%), Query Frame = 1
Query:  109 FPIREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEV-NPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYDPAT 849
            + ++   +KD+     + ++   ++   +L  I  ++  ++ ++ V   +A++ A + D  +K+++  SL GL G+P+ +KDNI+ K+  NT A S  L G V P DA V+  L+K   +I+GKA++ E++   SS   S F       KNP+ L   P               A +SLGTET GS+  P+S   +VGLKPT G  SR GV+      D VG   R V D A +   IAG D  D  T
Sbjct:    4 YKLKAHELKDM---ISKKEVKVEEVTNSFLNRIEEVDEKVNALLYVAKEEAVNTAKELD--KKIESGESLSGLSGVPVAIKDNISVKNMQNTCA-SKILEGYVSPYDATVIENLKKNNGVIIGKANMDEFA-MGSSTENSAFK----VSKNPWSLERVPGGSSGGSAVAVASLEAPISLGTETGGSVRQPASFCGLVGLKPTYGRISRYGVVAFGSTLDQVGMFARDVEDCALLTQNIAGLDKMDFTT 240          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_AZOSE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Azoarcus sp. (strain EbN1) GN=gatA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.244e-25
Identity = 84/239 (35.15%), Postives = 120/239 (50.21%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A++ +L+ A    K++S +L   +L  I RL+  L+  I V+ D   +A +A   R   AAG    L GIP+  KD   T+  + TT GS  L   V P DA VV  L+ AGA+ LGK ++ E++   SS   S F    G  KNP+  +  P              L  ++ GT+T GS+  P++   V G+KPT G+ SR G+I      D  G    + AD A +L A+AGFD  D
Sbjct:    4 ASLTELRAALDARKISSVELATLFLDRIERLDASLNAFITVDRDGALEAARAADARI--AAGDAGPLTGIPLAHKDVFCTEGVL-TTCGSKMLANFVSPYDAHVVSLLKTAGAVSLGKTNMDEFA-MGSSNENSHF----GPAKNPWDTTRIPGGSSGGSAAAVAARLVPIATGTDTGGSVRQPAALTGVTGIKPTYGVVSRYGMIAYASSLDQGGAFGASAADCAQLLTAMAGFDPRD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ACIAD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Acinetobacter sp. (strain ADP1) GN=gatA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.244e-25
Identity = 81/243 (33.33%), Postives = 123/243 (50.62%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +   ++++L     Q + +SR+L + YL  I +++  +   + V  + AL+QAD AD  R+   AG L G   +P+  KD   TK  + TTAGS  L   + P +A VV K   AG + LGK ++ E++   +S+     S   G   NP+ L   P             +LA  + GT+T GSI  P+S   + GLKPT G  SR G+I      D  GP+ R+  D AY+++ +AG D  D
Sbjct:    4 LHRLSVRELAEGLGQAQFSSRELTQHYLNRIDKIDAQVKSYVTVTHEQALAQADAADALRQAGNAGFLTG---VPLAHKDIFCTKG-IKTTAGSKMLDNFISPYNATVVEKANAAGLVTLGKLNMDEFAMGSTSE-----SSYFGATCNPWALDRVPGGSSGGSAAAVAADLAPFATGTDTGGSIRQPASFCGLTGLKPTYGRVSRFGMIAYASSLDQGGPMARSAEDCAYLMNVMAGHDAKD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSE14 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.931e-25
Identity = 81/243 (33.33%), Postives = 117/243 (48.15%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ ++     + K +S +L    L  I  L+P L+  I +  D A++QA  AD  R   AAG    L G P+  KD   T+  + T+ GS  L     P DA VV KL  AG + LGK ++ E++   +++     S   G  KNP+ L   P              L   + GT+T GSI  P++  ++ GLKPT G  SR G+I      D  GP+ RT  D A +L  +AGFD  D
Sbjct:    1 MHQMTLAEIARGLAEKKFSSEELTRVLLSRIATLDPQLNSFISLTEDLAITQAQAADARR---AAGENGPLLGAPLAHKDLFCTQG-IRTSCGSRMLDNFKAPYDATVVSKLASAGTVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLQCVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQAGPMARTAEDCALLLQGMAGFDPQD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_METMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei GN=gatA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.931e-25
Identity = 83/233 (35.62%), Postives = 118/233 (50.64%), Query Frame = 1
Query:  142 QLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            Q+  K  + ++ ++   YL  I +    ++G + ++  AL QA K D E      G    L G+PI +KDNI+     N+  GS  L G V P +A V+ KL  AGA+ILGK ++ E++   SS   S F    G   NP+ L   P               A  +LG++T GS+ CP+S   VVGLKPT G  SR GV+      + VGP+   V D A ++D IAG+D  D
Sbjct:   10 QVKEKIKESSAEEVTSRYLEVIKKSK--INGYLTISDKALEQAKKIDKE------GHEGPLAGVPIAIKDNISVVGLPNS-CGSKILEGYVPPFNAHVIEKLLSAGAVILGKTNMDEFA-MGSSTETSHF----GPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPASFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDIAVLMDVIAGYDRRD 228          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_BURPP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.931e-25
Identity = 86/243 (35.39%), Postives = 125/243 (51.44%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + E ++ +L+ A    + ++ +L + YL  I   N L +  I+V+PD  L+QA  AD       AG L GL   PI  KD   TK    +TAGS  L     P DA VV +L+ AG + +GK ++ E++   SS   S F    G  +NP+ + A P              LA  + GT+T GSI  P+S + + G+KPT G  SR G+I      D  GP+ ++ AD A +L+A+AGFD  D
Sbjct:    1 MHEKSLTELRAALTAKECSAVELAQLYLKRIDAANSL-NAFIQVDPDLTLAQAKAADALLHTGHAGPLVGL---PIAHKDVFVTKG-WRSTAGSKMLSNYESPFDATVVARLQNAGMVCVGKTNMDEFA-MGSSNENSYF----GPVQNPWDVKAVPGGSSGGSAAAVAARLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMAQSAADCATLLNAMAGFDERD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_SYNE7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus elongatus (strain PCC 7942) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.828e-25
Identity = 82/240 (34.17%), Postives = 125/240 (52.08%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A+I++L     + + ++ ++ E  L  I  L P L   + V  D A++QA   D  +++ A   +  L GIPI +KDN+ T+  + TT  S  L G V P ++ V  +L +AGA+ +GK +L E++   SS   S +        NP+ L+  P             +   V+LG++T GSI  P++   VVGLKPT GL SR G++      D +GP  R+V D A +L AIAG D  D
Sbjct:    2 ASIRELHSQLVRKERSAVEIAEAALQRIETLEPQLKSFLHVTADQAIAQAKAVD--QRIAAGEEISLLAGIPIGIKDNLCTRG-IPTTCASKILQGFVPPYESTVTQRLAEAGAVAVGKTNLDEFA-MGSSTENSAYQTTA----NPWDLTRVPGGSSGGSAAAVAADECVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFSRSVEDTAILLGAIAGHDPKD 233          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_PSEAB1.718e-2533.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PSEA81.718e-2533.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_NITEU1.718e-2533.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA1_CLOAB1.718e-2533.06Glutamyl-tRNA(Gln) amidotransferase subunit A 1 OS... [more]
GATA_AZOSE2.244e-2535.15Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_ACIAD2.244e-2533.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_PSE142.931e-2533.33Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_METMA2.931e-2535.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_BURPP2.931e-2535.39Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_SYNE73.828e-2534.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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