CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3373 contig Csv1_Contig3373:1..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_RALSO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Ralstonia solanacearum GN=gatA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.828e-25
Identity = 88/240 (36.67%), Postives = 120/240 (50.00%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDA-LSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +T+K L       ++++ +L   YL  I     L +  I V+P+A L+QA  AD      AAG    L GIPI  KD   T+     TAGS  L   V P DA VV +L  AG + LGK ++ E++   SS   S F    G  KNP+ ++  P             +LA  + GT+T GSI  P+S + + G+KPT G  SR G+I      D  GP+ RT  D A +L A+AGFD  D
Sbjct:    4 STLKTLSAQLAAKEVSAVELARHYLARIEARADL-NAFIHVDPEATLAQAQAADARL---AAGDAGPLAGIPIAHKDVFVTRG-WRATAGSKMLDSYVSPFDATVVERLAAAGMVTLGKTNMDEFA-MGSSNENSHF----GPVKNPWDVARVPGGSSGGSAAAVAADLAPAATGTDTGGSIRQPASFSGITGIKPTYGRVSRYGMIAFASSLDQGGPMARTAEDCALLLSAMAGFDARD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_NOSP7 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.828e-25
Identity = 84/240 (35.00%), Postives = 122/240 (50.83%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A+I++L     + + ++ ++ +  L  I  L P LH  + V  + AL QA   D   K+ A   +  L GIP+ +KDN+ TK  + TT  S  L   V P ++    KL  AGA+++GK +L E++   SS   S +        NP+ LS  P                 V+LG++T GSI  P+S   VVG+KPT GL SR G++      D +GP   TV DAA +L+AIAG D  D
Sbjct:    2 ASIRELHQQLVKKERSAVEITQEALERIEALEPKLHSFLCVTAERALEQAGAVD--AKIAAGEEIGLLAGIPVGIKDNLCTKG-IPTTCASRILENFVPPYESTATQKLADAGAVMVGKTNLDEFA-MGSSTENSAYQVTA----NPWNLSRVPGGSSGGSAAAVSSQECVVALGSDTGGSIRQPASFCGVVGMKPTYGLVSRYGLVAYASSLDQIGPFANTVEDAAILLNAIAGHDPKD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_ANAVT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.828e-25
Identity = 84/240 (35.00%), Postives = 122/240 (50.83%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A+I++L     + + ++ ++ +  L  I  L P LH  + +    AL QA   D   K+ A   +  L GIPI +KDN+ TK  + TT  S  L   V P ++ V  KL  AGA+++GK +L E++   SS   S +        NP+ LS  P                 V+LG++T GSI  P+S   VVGLKPT GL SR G++      D +GP  ++V D A +L AIAG+D  D
Sbjct:    2 ASIRELHEQLVKKERSAVEITQETLDHIQELEPKLHSFLHITAQQALEQARAVD--AKIAAGEEIGLLAGIPIGVKDNMCTKG-IPTTCASRILENFVPPYESTVTQKLLDAGAVVVGKTNLDEFA-MGSSTENSAYQVTA----NPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFGKSVEDTAILLKAIAGYDPKD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_THIDA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thiobacillus denitrificans (strain ATCC 25259) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.999e-25
Identity = 86/234 (36.75%), Postives = 118/234 (50.43%), Query Frame = 1
Query:  142 QLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            QLA KQ  ++SR+L + YL  I  LNP ++  I V+P+  L++A  AD    + A G+   L G+PI  KD   T D   TT GS  L   V P DA V+ + + AG   LGK ++ E++   SS   S F    G  KNP+     P              +A  + GT+T GSI  P++   + GLKPT GL SR G+I      D  GP+  +  D A +L+ I GFD  D
Sbjct:   12 QLAAKQ--VSSRELAQQYLDRIAALNPTINAFITVDPEKTLAEAAAAD---ALIAGGAAGPLTGVPIAHKDIFCT-DGWLTTCGSKMLANFVAPYDAHVIERCKAAGMPSLGKTNMDEFA-MGSSNETSFF----GAVKNPWNAGYVPGGSSGGAAACVAARMAPAATGTDTGGSIRQPAALCGITGLKPTYGLVSRYGMIAFASSLDQAGPMAPSAEDCARLLNVITGFDPKD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_SYNS3 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain CC9311) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.999e-25
Identity = 82/239 (34.31%), Postives = 127/239 (53.14%), Query Frame = 1
Query:  130 IKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGS-LRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            I + +   +  ++++R+L + +L  I  ++  +H  +EV  D A + AD+ D   + +AAG  L  L G+PI +KDN+ TK  + TT+ S  L   V P ++ V  +L ++GA+++GK +L E++   S++  S F    G   NP+     P                  SLG++T GSI  P+S   VVGLKPT G  SR G++      D VGP   +V+DAA +L AIAG D  D
Sbjct:    3 IAEWRQQLESGEVSARELTDHHLARIKAVDSSVHAFLEVTADRARADADRLD---EARAAGEDLPPLAGVPIAIKDNLCTKG-IRTTSSSRMLESFVPPYESTVTDRLWRSGAVLIGKTNLDEFAMGGSTET-SAF----GPTANPWNTGYVPGGSSGGSAAAVAAGECMASLGSDTGGSIRQPASFCGVVGLKPTYGRVSRYGLVAFASSLDQVGPFATSVSDAAELLQAIAGEDPRD 232          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_SYNP6 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.999e-25
Identity = 82/240 (34.17%), Postives = 125/240 (52.08%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A+I++L     + + ++ ++ E  L  I  L P L   + V  D A++QA   D  +++ A   +  L GIPI +KDN+ T+  + TT  S  L G V P ++ V  +L +AGA+ +GK +L E++   SS   S +        NP+ L+  P             +   V+LG++T GSI  P++   VVGLKPT GL SR G++      D +GP  R+V D A +L AIAG D  D
Sbjct:    2 ASIRELHSQLVRKERSAVEIAEAALQRIETLEPQLKSFLHVTADQAIAQAKAVD--QRIAAGEEISLLAGIPIGIKDNLCTRG-IPTTCASKILQGFVPPYESTVTQRLAEAGAVAVGKTNLDEFA-VGSSTENSAYQTTA----NPWDLTRVPGGSSGGSAAAVAADECVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAYASSLDQIGPFSRSVEDTAILLGAIAGHDPKD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_SYNJB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. GN=gatA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.999e-25
Identity = 81/240 (33.75%), Postives = 122/240 (50.83%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + I+ L       + ++ ++   YL  + +L P L   I V  + AL QA   D   +++A  ++  L GIP+ +KDN+ T+  + TT  S  L G + P ++ V  +L  AG + +GK +L E++   SS   S F     +  NP+ L+  P             + A V+LG++T GSI  P++   VVGLKPT GL SR G++      D VGP  RTV D A +L  IAG D  D
Sbjct:    2 SVIRALHRQLVTKERSAEEIAREYLERLAQLEPQLKSFITVTEELALQQARAVD--ARIRAGEAIGPLAGIPLAVKDNLCTQG-IRTTCASRMLEGFIPPYESTVTARLAAAGMVTVGKTNLDEFA-MGSSTENSAFQ----RTANPWDLTRVPGGSSGGSAAAVAADQAVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAFASSLDQVGPFGRTVEDVALLLQGIAGHDPMD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_SYNJA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain JA-3-3Ab) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.999e-25
Identity = 79/239 (33.05%), Postives = 120/239 (50.21%), Query Frame = 1
Query:  124 ATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + I+ L       + ++ ++   YL  + +L P L   I V  +   Q  KA  + +++A   +  L GIP+ +KDN+ T+  + TT  S  L G + P ++ V  +L  AG + +GK +L E++   SS   S F     +  NP+ L+  P             + A V+LG++T GSI  P++   VVGLKPT GL SR G++      D VGP  RTV D A +L  IAG D  D
Sbjct:    2 SVIRALHRQLVTKERSAEEIAREYLERLAQLEPQLKSFITVTEELALQQAKA-VDARIRAGEEIGPLAGIPLAVKDNLCTQG-IRTTCASRMLEGFIPPYESTVTARLAAAGMVTVGKTNLDEFA-MGSSTENSAFQ----RTANPWDLTRVPGGSSGGSAAAVAADQAVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAFASSLDQVGPFGRTVEDVALLLQGIAGHDPLD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_RENSM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=gatA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.999e-25
Identity = 85/227 (37.44%), Postives = 119/227 (52.42%), Query Frame = 1
Query:  163 KLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++TS Q+ + YL  I  ++  L+  + +N + AL  A + D +R   A   L  L G+PI +KD I TK +  TTAGS  L G + P DA V+ K+R A   ILGK +L E++   SS   S F    G  +NP+ L+  P               A ++LGT+T GSI  P +    VG+KPT G  SR G I +    D +GP+ RTV DAA + + I G D  D
Sbjct:   20 EVTSVQVTQAYLDRIALVDGELNAFLHLNAEEALRVAAEVDADRA--AGKELHELAGVPIAIKDLIVTKGQP-TTAGSKILEGWISPYDATVIEKIRAAKMPILGKTNLDEFA-MGSSTEHSAF----GPTRNPWDLTRIPGGSGGGSAAAVAAFEAPLALGTDTGGSIRQPGAVTGTVGVKPTYGGVSRYGAIAMASSLDQIGPVSRTVLDAALLQEVIGGHDPKD 238          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_METAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans GN=gatA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.999e-25
Identity = 82/233 (35.19%), Postives = 118/233 (50.64%), Query Frame = 1
Query:  142 QLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            Q+  K  + ++ ++   YL  I +    ++G I V+  AL QA K D E      G    L G+PI +KDNI+     N+  GS  L G V P +A V+ KL  AGA+ILGK +L E++   S++     +   G   NP+ L   P               A  +LG++T GS+ CP++   VVGLKPT G  SR GV+      + VGP+   V D A ++D IAG+D  D
Sbjct:   10 QVKDKIKESSAEEVTAGYLEVIEKSK--INGYITVSDKALEQAKKIDVE------GHEGPLAGVPIAIKDNISVVGLPNS-CGSKILEGYVPPFNAHVIEKLLDAGAVILGKTNLDEFAMGSSTE-----TSYYGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTGGSVRCPAAFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDIAILMDVIAGYDRRD 228          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_RALSO3.828e-2536.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_NOSP73.828e-2535.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=N... [more]
GATA_ANAVT3.828e-2535.00Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]
GATA_THIDA4.999e-2536.75Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_SYNS34.999e-2534.31Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNP64.999e-2534.17Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNJB4.999e-2533.75Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNJA4.999e-2533.05Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_RENSM4.999e-2537.44Glutamyl-tRNA(Gln) amidotransferase subunit A OS=R... [more]
GATA_METAC4.999e-2535.19Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
back to top