CV884890

Overview
NameCV884890
Unique NameCV884890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3373 contig Csv1_Contig3373:1..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CORDI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Corynebacterium diphtheriae GN=gatA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.999e-25
Identity = 80/227 (35.24%), Postives = 114/227 (50.22%), Query Frame = 1
Query:  163 KLTSRQLVEFYLGEIHRLNPLLHGVIEVN-PDALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            ++TSR++ + +L  I+ ++  LH  + V   +AL+ AD  D E   K       L G+P+ LKD   T D   TT  S  L G V P DA V  K+R+AG  ILGK ++ E++   SS   S +    G   NP+ +   P               A + +GT+T GSI  P++  + VG+KPT G  SR G++      D  GP  RTV D A + + IAG D YD
Sbjct:   27 EVTSREVTQAHLDRINDVDGTLHAFLHVGVEEALAAADAVD-ESLDKGEAPASALAGVPLALKDVFVTTDAP-TTCASKMLEGYVAPYDATVTKKIREAGIPILGKTNMDEFA-MGSSTENSAY----GPTLNPWDIERTPGGSGGGTSAALASGEAPLGIGTDTGGSIRQPAALTNTVGVKPTYGTVSRYGLVACASSLDQGGPTARTVLDTALLHEVIAGHDKYD 246          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_SYNSC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain CC9605) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.529e-25
Identity = 83/243 (34.16%), Postives = 127/243 (52.26%), Query Frame = 1
Query:  118 REATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRG-LHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            R+ TI   +   +  +++SR+LV+ +L  +    P L+  +EV  D A ++A + D   + +AAG   G L G+P+ +KDN+ TK  + TT  S  L   V P ++ V  +L +AG +++GK +L E++   S++  S F    G  +NP+  +  P                  SLG++T GSI  P+S   VVGLKPT G  SR G++      D VGP   +VAD A +L  IAG D  D
Sbjct:    4 RDMTISAWRQQLQSGEVSSRELVDQHLKRLESSEPSLNAFVEVTADQARAEASRID---EARAAGEALGPLAGLPLAIKDNLCTKG-VRTTCSSRMLEQFVPPYESTVTERLWQAGGVLVGKTNLDEFAMGGSTET-SAF----GATQNPWNTAHVPGGSSGGSAAAVAAGSCVASLGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQVGPFAGSVADVAELLQVIAGPDPRD 237          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_SYNP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.529e-25
Identity = 77/195 (39.49%), Postives = 109/195 (55.90%), Query Frame = 1
Query:  256 ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            AL+QA + D   K+ A  ++  L GIPI +KDN+ TK  + TT  S  L G V   ++ V  +L++AGAI++GK +L E++   SS   SG+   G    NP+ ++  P               A ++LG++T GSI  P+S   VVGLKPT GL SR G++      D +GP  RTV D A +L+AIAG D  D
Sbjct:   47 ALAQAAQVD--AKIAAGETIGLLEGIPIAIKDNLCTKG-IQTTCASRILEGFVPTYESTVTQELQEAGAIMVGKTNLDEFA-MGSSTENSGYQVTG----NPWDVTRVPGGSSGGSAAAVAAGEAPIALGSDTGGSIRQPASLCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFARTVEDTAILLEAIAGHDPKD 233          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_DESDA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.529e-25
Identity = 89/232 (38.36%), Postives = 118/232 (50.86%), Query Frame = 1
Query:  148 AFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            A ++ +L++  +    L  I    P L  ++ VN + AL++A   D E       + R L G+P+ LKD  +T+  M TTAGS  L G     DA  V KL +AGA+ILGK +L E++   SS   S F       +NP+ L+  P                  SLGT+T GSI  P+S    VGLKPT G  SR GVI      D VGP+ R+V D A VL AIAG+D  D
Sbjct:   15 ALQKKELSAVDVTTACLDRITATEPHLAALLYVNAENALARATTLDSE----GPDAARPLWGVPVTLKDAFSTRG-MPTTAGSRMLEGYTPFYDAFAVQKLHEAGAVILGKTNLDEFA-MGSSTENSAFKVT----RNPWNLNKVPGGSSGGSAASVTAGQCFASLGTDTGGSIRQPASFCGCVGLKPTYGRVSRYGVIAYGSSLDQVGPLTRSVEDCARVLTAIAGYDSRD 236          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_SYNPX (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain WH8102) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.528e-25
Identity = 83/239 (34.73%), Postives = 122/239 (51.05%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            TI   +   +   ++SR+LV+ +L  + +  P L+  +EV  + A + AD+ D  R   A   L  L G+P+ +KDN+ T+  + TT  S  L   V P ++ V  +L  AGA+++GK +L E++   S++  S F    G  KNP+ +   P                  SLG++T GSI  P+S   VVGLKPT G  SR G++      D VGP    VADAA +L  IAG D  D
Sbjct:    2 TISAWRQRLQAGGVSSRELVDEHLQRLEQSEPSLNAFVEVTAERARADADRVDQARA--AGEDLGPLAGLPLAIKDNLCTRG-VRTTCSSRMLEQFVPPYESTVTDRLWGAGAVLVGKTNLDEFAMGGSTET-SAF----GATKNPWNIEHVPGGSSGGSAAAVASGSCLASLGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLVAFASSLDQVGPFAGCVADAAELLQVIAGHDQRD 232          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSEU2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas syringae pv. syringae (strain B728a) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.528e-25
Identity = 80/243 (32.92%), Postives = 116/243 (47.74%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ ++       K +S +L    L  I  L+P L+  I +  D A++QA  AD  R   AAG    L G P+  KD   T+  + T+ GS  L     P DA VV +L  AG + LGK ++ E++   +++     S   G  KNP+ L   P              L   + GT+T GSI  P++  ++ GLKPT G  SR G+I      D  GP+ RT  D A +L  +AGFD  D
Sbjct:    1 MHQMTLAEIARGLADKKFSSEELTRVLLSRIATLDPQLNSFISLTEDLAITQAQAADARR---AAGENGPLLGAPLAHKDLFCTQG-IRTSCGSLMLDNFKAPYDATVVSRLASAGTVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLECVPGGSSGGSAAAVAARLLPAATGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQAGPMARTAEDCALLLQGMAGFDPQD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSEPK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas putida (strain KT2440) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.528e-25
Identity = 82/243 (33.74%), Postives = 115/243 (47.33%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ ++         +S +L    L  I +L+P ++  I V  D AL QA  AD  R   AAG    L G PI  KD   T   + T+ GS  L     P DA VV KL +AG + LGK ++ E++   +++     S   G  KNP+ L   P              L   + GT+T GSI  P++  ++ GLKPT G  SR G+I      D  GP+ RT  D A +L  +AGFD  D
Sbjct:    1 MHQLTLAEIARGLADKSFSSEELTGALLARIKQLDPQINSFISVTEDLALGQARAADARR---AAGETSALLGAPIAHKDLFCTNG-VRTSCGSKMLDNFKAPYDATVVAKLAEAGMVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALLLQGMAGFDAKD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_PSEPG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Pseudomonas putida (strain GB-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.528e-25
Identity = 82/243 (33.74%), Postives = 115/243 (47.33%), Query Frame = 1
Query:  115 IREATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            + + T+ ++         +S +L    L  I +L+P ++  I V  D AL QA  AD  R   AAG    L G PI  KD   T   + T+ GS  L     P DA VV KL +AG + LGK ++ E++   +++     S   G  KNP+ L   P              L   + GT+T GSI  P++  ++ GLKPT G  SR G+I      D  GP+ RT  D A +L  +AGFD  D
Sbjct:    1 MHQFTLAEIARGLADKSFSSEELTRALLARIKQLDPQINSFISVTEDLALGQARAADARR---AAGETGALLGAPIAHKDLFCTNG-VRTSCGSKMLDNFKAPYDATVVAKLAEAGMVTLGKTNMDEFAMGSANE-----SSHYGAVKNPWNLEHVPGGSSGGSAAAVAARLLPATTGTDTGGSIRQPAALTNLTGLKPTYGRVSRWGMIAYASSLDQGGPLARTAEDCALLLQGMAGFDAKD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_MARMS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Marinomonas sp. (strain MWYL1) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.528e-25
Identity = 81/241 (33.61%), Postives = 122/241 (50.62%), Query Frame = 1
Query:  121 EATIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            E +I  L    +   ++S +L   +L  I +L+P L+  I V+   AL QA  AD    +  +G    L GIP+  KD   T+  + TT GS  L   V P ++ V  ++++AGA++LGK ++ E++   SS   S +    G  KNP+ L   P              LA  + GT+T GSI  P+S   + GLKPT G  SR G+I      D  GP+ ++  D A+++ A+AGFD  D
Sbjct:    3 EQSISTLAQKLRNKDISSVELTRLFLARIAKLDPQLNSFITVSEQHALEQAAAADV---LLQSGKGTSLTGIPVAHKDLFCTEGTL-TTCGSKMLHNFVPPYESTVTSRIQQAGAVMLGKTNMDEFA-MGSSNENSFY----GAVKNPWNLDMVPGGSSGGSAAAIAAGLAVAATGTDTGGSIRQPASFCGITGLKPTYGRVSRFGMIAYASSLDQGGPMAKSAEDCAHLMQAMAGFDEKD 234          
BLAST of CV884890 vs. ExPASy Swiss-Prot
Match: GATA_CYAA5 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain ATCC 51142) GN=gatA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.528e-25
Identity = 83/239 (34.73%), Postives = 123/239 (51.46%), Query Frame = 1
Query:  127 TIKDLQLAFKQNKLTSRQLVEFYLGEIHRLNPLLHGVIEVNPD-ALSQADKADYERKVKAAGSLRGLHGIPILLKDNIATKDKMNTTAGSYALLGSVVPRDAGVVVKLRKAGAIILGKASLSEWSNFRSSKAPSGFSGRGGQGKNPYVLSADPCXXXXXXXXXXXXNLAAVSLGTETDGSILCPSSSNSVVGLKPTLGLTSRAGVIPITPRQDSVGPICRTVADAAYVLDAIAGFDHYD 840
            +I++L       + ++ ++    L  I+ ++  +   ++V  D AL  A K D   K+     +  L GIPI +KDN+ T   + TT GS  L   V P ++ V  KL+ AGA+++GK +L E++   SS   SG+        NP+ LS  P             +   V+LG++T GSI  P+S   VVGLKPT GL SR G++      D +GP  R V DAA +L AIAG+D  D
Sbjct:    3 SIRELHQQLVNKERSAVEITTEALERINAVDSKVKSFLQVTADHALETAKKVD--EKIAKNEEIGLLAGIPIGIKDNMCTTG-IKTTCGSKILANFVPPYESTVTQKLKDAGAVMVGKTNLDEFA-MGSSTENSGYQVTA----NPWDLSRVPGGSSGGSAAAVAASECVVALGSDTGGSIRQPASLCGVVGLKPTYGLVSRFGLVAYASSLDQIGPFARNVQDAAILLGAIAGYDPKD 233          
The following BLAST results are available for this feature:
BLAST of CV884890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CORDI4.999e-2535.24Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_SYNSC6.529e-2534.16Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNP26.529e-2539.49Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_DESDA6.529e-2538.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_SYNPX8.528e-2534.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PSEU28.528e-2532.92Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PSEPK8.528e-2533.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PSEPG8.528e-2533.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_MARMS8.528e-2533.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_CYAA58.528e-2534.73Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884890 ID=CV884890; Name=CV884890; organism=Citrus sinensis; type=EST; length=866bp
ATGCATTGCCTAAAAATGGCTACCGCAATACTGGCCTTTTCTTTGTTTTC
CCATCTGCTCCTTCCGACTCTTCTAGCCATATCAGCTCAGAGTAATGCCA
TTCATGCATTCCCAATAAGAGAAGCAACCATCAAGGATCTCCAGCTCGCT
TTCAAGCAAAACAAGCTTACGTCCCGGCAGCTGGTTGAATTTTACCTCGG
AGAAATCCACAGGCTCAACCCGCTGCTTCACGGCGTCATAGAGGTGAACC
CCGATGCGCTATCCCAAGCTGATAAGGCTGACTACGAGCGCAAGGTTAAG
GCAGCAGGCTCTCTGCGGGGCTTGCACGGGATTCCGATTCTTCTTAAGGA
TAACATTGCAACGAAGGACAAGATGAACACCACTGCTGGCTCGTATGCTC
TGCTCGGCTCAGTCGTGCCCCGGGATGCTGGTGTGGTGGTGAAGTTGAGG
AAAGCTGGTGCCATTATTTTGGGAAAGGCCAGCTTGAGTGAGTGGTCTAA
CTTTAGATCCTCCAAAGCACCCAGTGGTTTCAGTGGTAGGGGTGGCCAGG
GAAAGAATCCATATGTTCTATCAGCAGATCCTTGTGGGTCAAGCAGTGGC
TCAGCAATTTCAGTAGCTGCAAACTTGGCTGCCGTGTCACTGGGAACTGA
AACGGATGGTTCCATTCTCTGTCCGTCCAGTTCTAACTCAGTAGTGGGAC
TCAAACCAACCCTTGGTCTCACCAGCAGAGCCGGCGTTATCCCAATAACT
CCTAGACAGGACTCCGTTGGGCCTATTTGCAGAACTGTAGCGGATGCTGC
TTATGTTCTAGATGCCATTGCAGGATTTGATCATTACGATCCTGCAACAA
GGGCAGCATCAGAATA
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