CV884885

Overview
NameCV884885
Unique NameCV884885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1901 contig Csv1_Contig1901:344..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AV_HUMAN (Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 3.179e-48
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = -3 
Query:  283 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 624
            KD  K K + +SRS RAG+QFPVGRIHRHLK+R  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AV_DANRE (Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 3.179e-48
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = -3 
Query:  283 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 624
            KD  K K + +SRS RAG+QFPVGRIHRHLK+R  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AV_CHICK (Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.179e-48
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = -3 
Query:  283 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 624
            KD  K K + +SRS RAG+QFPVGRIHRHLK+R  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AV_BOVIN (Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 3.179e-48
Identity = 96/114 (84.21%), Postives = 103/114 (90.35%), Query Frame = -3 
Query:  283 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 624
            KD  K K + +SRS RAG+QFPVGRIHRHLK+R  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AV_RABIT (Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE=2 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 9.249e-48
Identity = 95/114 (83.33%), Postives = 102/114 (89.47%), Query Frame = -3 
Query:  283 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 624
            KD  K K + +SRS RAG+QFPVGRIHRHLK+R  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGG IPHIHKSLI K
Sbjct:    8 KDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGAIPHIHKSLIGK 121
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AZL_XENTR (Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl PE=2 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 8.657e-46
Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = -3 
Query:  283 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 624
            KD  K K   I+RSSRAG+QFPVGRIHR LK+R  +HGRVG TAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDTGKAKATSITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGK 121
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 183.726 bits (465), Expect = 8.657e-46
Identity = 94/114 (82.46%), Postives = 100/114 (87.72%), Query Frame = -3 
Query:  283 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 624
            KD  K K   I+RSSRAG+QFPVGRIHR LK+R  +HGRVG TAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELD LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDTGKAKATSITRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIKATIAGGGVIPHIHKSLIGK 121
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AV_CAEEL (Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 PE=2 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 1.477e-45
Identity = 92/114 (80.70%), Postives = 100/114 (87.72%), Query Frame = -3 
Query:  283 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 624
            KD  K K + +SRS+RAG+QFPVGRIHR LK R  + GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHL LAIRGDEELDTLIK TIAGGGVIPHIH+ L+NK
Sbjct:   10 KDSGKSKSKVVSRSARAGLQFPVGRIHRFLKQRTTSSGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLHLAIRGDEELDTLIKATIAGGGVIPHIHRYLMNK 123
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AV_TETTH (Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 4.021e-43
Identity = 88/110 (80.00%), Postives = 97/110 (88.18%), Query Frame = -3 
Query:  283 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 612
            K+KK P SRS +AG+QFPVGRIHR LK R++A  RVGATAAVY A+ILEYLTAEVLELAGNASKD KV+RITPRHL LAIRGDEELD LIK TIAGGGVIPHIHK+L+ K
Sbjct:   22 KNKKTPQSRSYKAGLQFPVGRIHRFLKGRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFKVRRITPRHLLLAIRGDEELDILIKATIAGGGVIPHIHKALLGK 131
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.882e-41
Identity = 80/112 (71.43%), Postives = 99/112 (88.39%), Query Frame = -3 
Query:  274 DKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTK 609
            + K+  ++S+RAG+QFPVGRIHRHLKSR   H R+GA AAVY ++ILEYLTAEVLELAGNASKD+++KRITPRHLQLAIRGDEELD++++ TIAGGGV+PHIHK+LI   +K
Sbjct:   19 EPKKQTTQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVRATIAGGGVLPHIHKTLIKAPSK 130
The following BLAST results are available for this feature:
BLAST of CV884885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2AV_HUMAN3.179e-4884.21Histone H2A.V OS=Homo sapiens GN=H2AFV PE=1 SV=3[more]
H2AV_DANRE3.179e-4884.21Histone H2A.V OS=Danio rerio GN=h2afv PE=2 SV=3[more]
H2AV_CHICK3.179e-4884.21Histone H2A.V OS=Gallus gallus GN=H2AFV PE=1 SV=2[more]
H2AV_BOVIN3.179e-4884.21Histone H2A.V OS=Bos taurus GN=H2AFV PE=2 SV=3[more]
H2AV_RABIT9.249e-4883.33Histone H2A.V OS=Oryctolagus cuniculus GN=H2AFV PE... [more]
H2AZL_XENTR8.657e-4682.46Histone H2A.Z-like OS=Xenopus tropicalis GN=h2a.zl... [more]
H2AZL_XENLA8.657e-4682.46Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AV_CAEEL1.477e-4580.70Histone H2A.V OS=Caenorhabditis elegans GN=htz-1 P... [more]
H2AV_TETTH4.021e-4380.00Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 P... [more]
H2AZ_USTMA2.882e-4171.43Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884885 ID=CV884885; Name=CV884885; organism=Citrus sinensis; type=EST; length=731bp
CAAGCAGGAGAGAAATGAATTGGAAACAGTGACAGAAAGAAAAAGAAACA
AGACAAAATAGTACATAACGAACAACATTCCTACTCCAAACATGAGTATA
TTAGATCCAGAGGACAAACCTAAGAGTCAAGCCATATGTACTAACCAAGA
TATTCTAGACAACCTACTAAAAAACACAAAATGAGTCCAAGATTACCCTA
ACTGGAAAACAGTAACACATAAAACCAAAGTCATCACTAGAGAGCGATTC
AAAACCACGCAAAGAACTCAATCTTTGGTAGTTTTGTTGATAAGTGATTT
GTGAATGTGAGGGATCACACCACCTCCAGCAATGGTCCCCTTGATGAGAG
TGTCCAGCTCTTCATCTCCTCTAATAGCAAGCTGCAGATGCCTTGGCGTA
ATTCTCTTCACCTTCAGATCCTTGCTTGCATTCCCAGCCAGCTCAAGAAC
CTCAGCAGTCAGGTATTCAAGGATTGAAGCCAAATAAACAGCAGCAGTGG
CCCCAACACGTCCATGGGCAGCAATCCTTGACTTGAGGTGGCGGTGAATG
CGACCCACAGGAAACTGGATACCGGCACGAGATGACCTGGAAATTGGCCT
TTTCTTATCCTTGTCCTTATCCTTGTTACCAGCCGTGGTTTTCGCTGCTA
AAAGACCCTTCCCTCCTTTTCCCGCCATGTCTCACCTGAAAATCTTGGAA
GCCGAAGAGAAAAGAAGAGAGAGATTTTCCT
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