CV884885

Overview
NameCV884885
Unique NameCV884885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_EUGGR (Histone H2A OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.539e-23
Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = -3
Query:  274 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 612
            K K     +S +AG+ FPVGR    L++   A  RVG  A VYLA++LEYL+AE+LELAGNAS+D K KRITPR L LA+R DEEL+ L+ G TIA GGV+P+I + L+ K  K
Sbjct:   24 KGKTGGSGQSKKAGLTFPVGRTGSLLRAGRYAK-RVGKGAPVYLAAVLEYLSAELLELAGNASRDNKKKRITPRFLTLAVRNDEELNKLLSGVTIASGGVLPNIQQVLLKKKGK 136          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A3_STRPU (Histone H2A-beta, sperm (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.884e-23
Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = -3
Query:  346 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTL 612
            K K +   RSSRAG+QFPVGR+HR L+    A+ RVGA A VYLA++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L
Sbjct:    1 KAKGKAKRRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 88          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AZ_DICDI (Histone H2A.z OS=Dictyostelium discoideum GN=H2AZ PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.996e-22
Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = -3
Query:  292 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLEL----AGNASKDL-KVKRITPRHLQLAIRGDEELDTLIK--GTIAGGGVIPHIHKSL 618
            K   + +P+ +S++AG+ FPVGRIHR LK+++    RV   ++VYLA+ILEYL +EVLEL        SK+   V+RI+PRHL LAI+ DEELD LI+   TIAGGGVIP+IH+ L
Sbjct:   10 KVNKRVKPVPKSTKAGLIFPVGRIHRMLKNKVPLK-RVSILSSVYLAAILEYLASEVLELTISQVSIQSKEYHNVRRISPRHLLLAIKTDEELDNLIRVSTTIAGGGVIPYIHEVL 124          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_TRYCR (Histone H2A OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 54/115 (46.96%), Postives = 79/115 (68.70%), Query Frame = -3
Query:  283 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKD--LKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 618
            K   KKR   RS++AG+ FPVGR+   L+    A  R+GA+ AVY+A++LEYLTAE+LEL+  A+     K KR+TPR + LA+R D++L  L+K  T++ GGV+P ++K+L  K
Sbjct:    9 KKASKKRSGGRSAKAGLIFPVGRVGSLLRRGQYAR-RIGASGAVYMAAVLEYLTAELLELSVKAASQQAKKPKRLTPRTVTLAVRHDDDLGMLLKDVTLSRGGVMPSLNKALAKK 122          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A2_XENLA (Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 55/118 (46.61%), Postives = 76/118 (64.41%), Query Frame = -3
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 624
            K   K + +  +RSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELA     ++  + +       ++  DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKTRAKSKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAWERLPEITKRPVLSPGTCNSLCNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTE 122          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = -3
Query:  274 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 606
            K +P SRS+RAGI FPV R+ R L+    A  RV +TA VYLA++LEYL  E+LELA N     K  RITP+H+  A+  D EL++L +  TIA GGV+P   +S   K  K
Sbjct:   31 KSKPESRSARAGITFPVSRVDRLLREGRFAP-RVESTAPVYLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEKKKK 141          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AY_TETTH (Histone H2A.Y OS=Tetrahymena thermophila GN=HTAY PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = -3
Query:  274 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTI--AGGGVIPHIHKSLINKTTK 591
            S S ++G+ FP GR+ R+LK +     RV ++  +YLA +LEYL AEVLE AGN +K+ ++ RI P H++ A R D EL+  + GTI   GG    +    +INK+ K
Sbjct:  282 STSQKSGLVFPCGRLRRYLK-QACKQFRVSSSCNIYLAGVLEYLAAEVLETAGNIAKNNRLSRINPVHIREAFRNDAELNQFVNGTIIAEGGSTSTNFVLPIINKSKK 388          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A1_LEIIN (Histone H2A.1 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = -3
Query:  283 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVK--RITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 591
            S+S++ G+ FPVGR+   ++    A  R+GA+ AVYLA++LEYLTAE+LEL+  A+     K  R+ PR + LA R D+++ TL+K  T++  GV+P+I K++  K
Sbjct:   16 SKSAKCGLIFPVGRVGGMMRRGQYAR-RIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPNISKAMAKK 120          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = -3
Query:  292 RSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSL 588
            RS +A +QF V R+   LK       R+GATA VYLA++LE L AEVLE+A N ++  K   I PRH+ LA+R D E++ L  G TI+  GV+P   K L
Sbjct:   18 RSEKAALQFSVSRVEYSLKKGRYCR-RLGATAPVYLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKEL 116          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14
Identity = 46/113 (40.71%), Postives = 74/113 (65.49%), Query Frame = -3
Query:  283 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVK--RITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 612
            K  ++  S+S++ G+ FPVGR+   ++    A  R+GA+ AVYLA++LEYLTAE+LEL+  A+     K  R+ PR + LA R D+++ TL+K  T++  GV+P + K++  K
Sbjct:    9 KAARKSGSKSAKCGLIFPVGRVGGMMRRGQYAR-RIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKK 120          
The following BLAST results are available for this feature:
BLAST of CV884885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2A_EUGGR3.539e-2355.26Histone H2A OS=Euglena gracilis PE=2 SV=1[more]
H2A3_STRPU7.884e-2365.17Histone H2A-beta, sperm (Fragment) OS=Strongylocen... [more]
H2AZ_DICDI2.996e-2253.45Histone H2A.z OS=Dictyostelium discoideum GN=H2AZ ... [more]
H2A_TRYCR2.010e-1846.96Histone H2A OS=Trypanosoma cruzi PE=3 SV=2[more]
H2A2_XENLA4.477e-1846.61Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3[more]
H2AX_DICDI3.790e-1749.11Histone H2A.x OS=Dictyostelium discoideum GN=H2AX ... [more]
H2AY_TETTH5.473e-1642.59Histone H2A.Y OS=Tetrahymena thermophila GN=HTAY P... [more]
H2A1_LEIIN7.903e-1543.40Histone H2A.1 OS=Leishmania infantum PE=2 SV=1[more]
H2A2_LILLO1.032e-1447.00Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 S... [more]
H2A2_LEIIN1.761e-1440.71Histone H2A.2 OS=Leishmania infantum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884885 ID=CV884885; Name=CV884885; organism=Citrus sinensis; type=EST; length=731bp
CAAGCAGGAGAGAAATGAATTGGAAACAGTGACAGAAAGAAAAAGAAACA
AGACAAAATAGTACATAACGAACAACATTCCTACTCCAAACATGAGTATA
TTAGATCCAGAGGACAAACCTAAGAGTCAAGCCATATGTACTAACCAAGA
TATTCTAGACAACCTACTAAAAAACACAAAATGAGTCCAAGATTACCCTA
ACTGGAAAACAGTAACACATAAAACCAAAGTCATCACTAGAGAGCGATTC
AAAACCACGCAAAGAACTCAATCTTTGGTAGTTTTGTTGATAAGTGATTT
GTGAATGTGAGGGATCACACCACCTCCAGCAATGGTCCCCTTGATGAGAG
TGTCCAGCTCTTCATCTCCTCTAATAGCAAGCTGCAGATGCCTTGGCGTA
ATTCTCTTCACCTTCAGATCCTTGCTTGCATTCCCAGCCAGCTCAAGAAC
CTCAGCAGTCAGGTATTCAAGGATTGAAGCCAAATAAACAGCAGCAGTGG
CCCCAACACGTCCATGGGCAGCAATCCTTGACTTGAGGTGGCGGTGAATG
CGACCCACAGGAAACTGGATACCGGCACGAGATGACCTGGAAATTGGCCT
TTTCTTATCCTTGTCCTTATCCTTGTTACCAGCCGTGGTTTTCGCTGCTA
AAAGACCCTTCCCTCCTTTTCCCGCCATGTCTCACCTGAAAATCTTGGAA
GCCGAAGAGAAAAGAAGAGAGAGATTTTCCT
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