CV884885
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_EUGGR (Histone H2A OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.539e-23 Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = -3 Query: 274 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 612 K K +S +AG+ FPVGR L++ A RVG A VYLA++LEYL+AE+LELAGNAS+D K KRITPR L LA+R DEEL+ L+ G TIA GGV+P+I + L+ K K Sbjct: 24 KGKTGGSGQSKKAGLTFPVGRTGSLLRAGRYAK-RVGKGAPVYLAAVLEYLSAELLELAGNASRDNKKKRITPRFLTLAVRNDEELNKLLSGVTIASGGVLPNIQQVLLKKKGK 136
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A3_STRPU (Histone H2A-beta, sperm (Fragment) OS=Strongylocentrotus purpuratus PE=1 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.884e-23 Identity = 58/89 (65.17%), Postives = 69/89 (77.53%), Query Frame = -3 Query: 346 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTL 612 K K + RSSRAG+QFPVGR+HR L+ A+ RVGA A VYLA++LEYL AE+LELAGNA++D K RI PRHLQLAIR DEEL+ L Sbjct: 1 KAKGKAKRRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL 88
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AZ_DICDI (Histone H2A.z OS=Dictyostelium discoideum GN=H2AZ PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.996e-22 Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = -3 Query: 292 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLEL----AGNASKDL-KVKRITPRHLQLAIRGDEELDTLIK--GTIAGGGVIPHIHKSL 618 K + +P+ +S++AG+ FPVGRIHR LK+++ RV ++VYLA+ILEYL +EVLEL SK+ V+RI+PRHL LAI+ DEELD LI+ TIAGGGVIP+IH+ L Sbjct: 10 KVNKRVKPVPKSTKAGLIFPVGRIHRMLKNKVPLK-RVSILSSVYLAAILEYLASEVLELTISQVSIQSKEYHNVRRISPRHLLLAIKTDEELDNLIRVSTTIAGGGVIPYIHEVL 124
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_TRYCR (Histone H2A OS=Trypanosoma cruzi PE=3 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18 Identity = 54/115 (46.96%), Postives = 79/115 (68.70%), Query Frame = -3 Query: 283 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKD--LKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 618 K KKR RS++AG+ FPVGR+ L+ A R+GA+ AVY+A++LEYLTAE+LEL+ A+ K KR+TPR + LA+R D++L L+K T++ GGV+P ++K+L K Sbjct: 9 KKASKKRSGGRSAKAGLIFPVGRVGSLLRRGQYAR-RIGASGAVYMAAVLEYLTAELLELSVKAASQQAKKPKRLTPRTVTLAVRHDDDLGMLLKDVTLSRGGVMPSLNKALAKK 122
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A2_XENLA (Histone H2A type 2 OS=Xenopus laevis PE=3 SV=3) HSP 1 Score: 91.6633 bits (226), Expect = 4.477e-18 Identity = 55/118 (46.61%), Postives = 76/118 (64.41%), Query Frame = -3 Query: 274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 624 K K + + +RSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELA ++ + + ++ DEEL+ L+ G TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKTRAKSKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAWERLPEITKRPVLSPGTCNSLCNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTE 122
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17 Identity = 55/112 (49.11%), Postives = 71/112 (63.39%), Query Frame = -3 Query: 274 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 606 K +P SRS+RAGI FPV R+ R L+ A RV +TA VYLA++LEYL E+LELA N K RITP+H+ A+ D EL++L + TIA GGV+P +S K K Sbjct: 31 KSKPESRSARAGITFPVSRVDRLLREGRFAP-RVESTAPVYLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEKKKK 141
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AY_TETTH (Histone H2A.Y OS=Tetrahymena thermophila GN=HTAY PE=2 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 5.473e-16 Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = -3 Query: 274 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTI--AGGGVIPHIHKSLINKTTK 591 S S ++G+ FP GR+ R+LK + RV ++ +YLA +LEYL AEVLE AGN +K+ ++ RI P H++ A R D EL+ + GTI GG + +INK+ K Sbjct: 282 STSQKSGLVFPCGRLRRYLK-QACKQFRVSSSCNIYLAGVLEYLAAEVLETAGNIAKNNRLSRINPVHIREAFRNDAELNQFVNGTIIAEGGSTSTNFVLPIINKSKK 388
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A1_LEIIN (Histone H2A.1 OS=Leishmania infantum PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.903e-15 Identity = 46/106 (43.40%), Postives = 72/106 (67.92%), Query Frame = -3 Query: 283 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVK--RITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 591 S+S++ G+ FPVGR+ ++ A R+GA+ AVYLA++LEYLTAE+LEL+ A+ K R+ PR + LA R D+++ TL+K T++ GV+P+I K++ K Sbjct: 16 SKSAKCGLIFPVGRVGGMMRRGQYAR-RIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPNISKAMAKK 120
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14 Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = -3 Query: 292 RSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSL 588 RS +A +QF V R+ LK R+GATA VYLA++LE L AEVLE+A N ++ K I PRH+ LA+R D E++ L G TI+ GV+P K L Sbjct: 18 RSEKAALQFSVSRVEYSLKKGRYCR-RLGATAPVYLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKEL 116
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.761e-14 Identity = 46/113 (40.71%), Postives = 74/113 (65.49%), Query Frame = -3 Query: 283 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVK--RITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 612 K ++ S+S++ G+ FPVGR+ ++ A R+GA+ AVYLA++LEYLTAE+LEL+ A+ K R+ PR + LA R D+++ TL+K T++ GV+P + K++ K Sbjct: 9 KAARKSGSKSAKCGLIFPVGRVGGMMRRGQYAR-RIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKK 120 The following BLAST results are available for this feature:
BLAST of CV884885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 243
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884885 ID=CV884885; Name=CV884885; organism=Citrus sinensis; type=EST; length=731bpback to top |