CV884885

Overview
NameCV884885
Unique NameCV884885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1901 contig Csv1_Contig1901:344..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.305e-29
Identity = 70/111 (63.06%), Postives = 86/111 (77.48%), Query Frame = -3
Query:  274 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 603
            K+ +SRSS+AG+QFPVGRI R+LK    A  R+GA A VYLA++LEYLTAEVLELAGNA++D K  RI PRH+QLAIR DEEL  L+   TIA GGV+P+IH  L+ K +K
Sbjct:   12 KKAVSRSSKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSK 121          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.305e-29
Identity = 70/111 (63.06%), Postives = 86/111 (77.48%), Query Frame = -3
Query:  283 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 612
            K K +  SRSSRAG+QFPVGR+HR L+    A+ RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K
Sbjct:    9 KSKSKAKSRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 118          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = -3
Query:  274 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 612
            K K +  SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = -3
Query:  274 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 612
            K K +  SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = -3
Query:  274 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 612
            K K +  SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.316e-29
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = -3
Query:  274 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 612
            K K +  SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 5.637e-29
Identity = 70/115 (60.87%), Postives = 87/115 (75.65%), Query Frame = -3
Query:  283 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 624
            K   K + +  +RSSRAG+QFPVGR+HR L+    AH RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K
Sbjct:    6 KAVSKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAH-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 119          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.362e-29
Identity = 69/111 (62.16%), Postives = 86/111 (77.48%), Query Frame = -3
Query:  274 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 603
            K+ +SRS++AG+QFPVGRI R+LK    A  R+GA A VYLA++LEYLTAEVLELAGNA++D K  RI PRH+QLAIR DEEL  L+   TIA GGV+P+IH  L+ K +K
Sbjct:   12 KKAVSRSAKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSK 121          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 7.362e-29
Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = -3
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.616e-29
Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = -3
Query:  277 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    6 KTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
The following BLAST results are available for this feature:
BLAST of CV884885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2A4_VOLCA3.305e-2963.06Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A4_PSAMI3.305e-2963.06Late histone H2A.2.2 OS=Psammechinus miliaris PE=3... [more]
H2A_MYTGA4.316e-2964.04Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3[more]
H2A_MYTED4.316e-2964.04Histone H2A OS=Mytilus edulis PE=3 SV=3[more]
H2A_MYTCH4.316e-2964.04Histone H2A OS=Mytilus chilensis PE=3 SV=3[more]
H2A_MYTCA4.316e-2964.04Histone H2A OS=Mytilus californianus PE=3 SV=3[more]
H2AX_XENLA5.637e-2960.87Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]
H2A3_VOLCA7.362e-2962.16Histone H2A-III OS=Volvox carteri PE=3 SV=1[more]
H2A2B_HUMAN7.362e-2960.17Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ... [more]
H2AX_HUMAN9.616e-2961.54Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884885 ID=CV884885; Name=CV884885; organism=Citrus sinensis; type=EST; length=731bp
CAAGCAGGAGAGAAATGAATTGGAAACAGTGACAGAAAGAAAAAGAAACA
AGACAAAATAGTACATAACGAACAACATTCCTACTCCAAACATGAGTATA
TTAGATCCAGAGGACAAACCTAAGAGTCAAGCCATATGTACTAACCAAGA
TATTCTAGACAACCTACTAAAAAACACAAAATGAGTCCAAGATTACCCTA
ACTGGAAAACAGTAACACATAAAACCAAAGTCATCACTAGAGAGCGATTC
AAAACCACGCAAAGAACTCAATCTTTGGTAGTTTTGTTGATAAGTGATTT
GTGAATGTGAGGGATCACACCACCTCCAGCAATGGTCCCCTTGATGAGAG
TGTCCAGCTCTTCATCTCCTCTAATAGCAAGCTGCAGATGCCTTGGCGTA
ATTCTCTTCACCTTCAGATCCTTGCTTGCATTCCCAGCCAGCTCAAGAAC
CTCAGCAGTCAGGTATTCAAGGATTGAAGCCAAATAAACAGCAGCAGTGG
CCCCAACACGTCCATGGGCAGCAATCCTTGACTTGAGGTGGCGGTGAATG
CGACCCACAGGAAACTGGATACCGGCACGAGATGACCTGGAAATTGGCCT
TTTCTTATCCTTGTCCTTATCCTTGTTACCAGCCGTGGTTTTCGCTGCTA
AAAGACCCTTCCCTCCTTTTCCCGCCATGTCTCACCTGAAAATCTTGGAA
GCCGAAGAGAAAAGAAGAGAGAGATTTTCCT
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