CV884885
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 9.616e-29 Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = -3 Query: 274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 624 K K + + +RSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTE 122
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A1_RAT (Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 9.616e-29 Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = -3 Query: 274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 624 K K + + SRSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28 Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = -3 Query: 277 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 612 K K + SRSSRAG+QFPVGR+HR L+ A+ RVGA A VYLA++LEYL AE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K T Sbjct: 9 KAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3) HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28 Identity = 72/114 (63.16%), Postives = 86/114 (75.44%), Query Frame = -3 Query: 274 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 612 K K + SRSSRAG+QFPVGRIHR L+ A RVGA A VYLA+++EYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K T+ Sbjct: 9 KVKGKSKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28 Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = -3 Query: 277 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTT 624 K K + + SRSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K T Sbjct: 6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AJ_MACFA (Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28 Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = -3 Query: 274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 624 K K + + SRSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AJ_HUMAN (Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28 Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = -3 Query: 274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 624 K K + + SRSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AJ_BOVIN (Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28 Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = -3 Query: 274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 624 K K + + SRSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28 Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = -3 Query: 277 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTT 624 K K + + SRSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K T Sbjct: 6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28 Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = -3 Query: 277 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 612 K K + SRSSRAG+QFPVGR+HR L+ A+ RVGA A VYLA++LEYL AE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K T Sbjct: 9 KAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120 The following BLAST results are available for this feature:
BLAST of CV884885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 243
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884885 ID=CV884885; Name=CV884885; organism=Citrus sinensis; type=EST; length=731bpback to top |