CV884885

Overview
NameCV884885
Unique NameCV884885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1901 contig Csv1_Contig1901:344..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.616e-29
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = -3
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 624
            K   K + +  +RSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTE 122          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A1_RAT (Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.616e-29
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = -3
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28
Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = -3
Query:  277 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 612
            K K +  SRSSRAG+QFPVGR+HR L+    A+ RVGA A VYLA++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    9 KAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28
Identity = 72/114 (63.16%), Postives = 86/114 (75.44%), Query Frame = -3
Query:  274 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 612
            K K +  SRSSRAG+QFPVGRIHR L+    A  RVGA A VYLA+++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KVKGKSKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28
Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = -3
Query:  277 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTT 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AJ_MACFA (Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = -3
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AJ_HUMAN (Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = -3
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2AJ_BOVIN (Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28
Identity = 72/118 (61.02%), Postives = 88/118 (74.58%), Query Frame = -3
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28
Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = -3
Query:  277 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTT 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28
Identity = 71/113 (62.83%), Postives = 86/113 (76.11%), Query Frame = -3
Query:  277 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 612
            K K +  SRSSRAG+QFPVGR+HR L+    A+ RVGA A VYLA++LEYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    9 KAKGKAKSRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
The following BLAST results are available for this feature:
BLAST of CV884885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2A1_XENLA9.616e-2959.32Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2[more]
H2A1_RAT9.616e-2961.02Histone H2A type 1 OS=Rattus norvegicus PE=1 SV=2[more]
H2A_PARAN1.256e-2862.83Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2A_LITVA1.256e-2863.16Histone H2A OS=Litopenaeus vannamei PE=1 SV=3[more]
H2A_CAIMO1.256e-2861.54Histone H2A OS=Cairina moschata PE=3 SV=2[more]
H2AJ_MACFA1.256e-2861.02Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2... [more]
H2AJ_HUMAN1.256e-2861.02Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1[more]
H2AJ_BOVIN1.256e-2861.02Histone H2A.J OS=Bos taurus GN=H2AFJ PE=2 SV=1[more]
H2A4_CHICK1.256e-2861.54Histone H2A-IV OS=Gallus gallus PE=1 SV=2[more]
H2A3_PSAMI1.256e-2862.83Late histone H2A.3, gonadal OS=Psammechinus miliar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884885 ID=CV884885; Name=CV884885; organism=Citrus sinensis; type=EST; length=731bp
CAAGCAGGAGAGAAATGAATTGGAAACAGTGACAGAAAGAAAAAGAAACA
AGACAAAATAGTACATAACGAACAACATTCCTACTCCAAACATGAGTATA
TTAGATCCAGAGGACAAACCTAAGAGTCAAGCCATATGTACTAACCAAGA
TATTCTAGACAACCTACTAAAAAACACAAAATGAGTCCAAGATTACCCTA
ACTGGAAAACAGTAACACATAAAACCAAAGTCATCACTAGAGAGCGATTC
AAAACCACGCAAAGAACTCAATCTTTGGTAGTTTTGTTGATAAGTGATTT
GTGAATGTGAGGGATCACACCACCTCCAGCAATGGTCCCCTTGATGAGAG
TGTCCAGCTCTTCATCTCCTCTAATAGCAAGCTGCAGATGCCTTGGCGTA
ATTCTCTTCACCTTCAGATCCTTGCTTGCATTCCCAGCCAGCTCAAGAAC
CTCAGCAGTCAGGTATTCAAGGATTGAAGCCAAATAAACAGCAGCAGTGG
CCCCAACACGTCCATGGGCAGCAATCCTTGACTTGAGGTGGCGGTGAATG
CGACCCACAGGAAACTGGATACCGGCACGAGATGACCTGGAAATTGGCCT
TTTCTTATCCTTGTCCTTATCCTTGTTACCAGCCGTGGTTTTCGCTGCTA
AAAGACCCTTCCCTCCTTTTCCCGCCATGTCTCACCTGAAAATCTTGGAA
GCCGAAGAGAAAAGAAGAGAGAGATTTTCCT
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