CV884885

Overview
NameCV884885
Unique NameCV884885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1901 contig Csv1_Contig1901:344..1074. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = -3 
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VY+A++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = -3 
Query:  274 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 612
            K K +  SRSSRAG+QFPVGRIHR L+    A  R+GA A VYLA+++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KAKGKSKSRSSRAGLQFPVGRIHRLLRKGNYAE-RIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A2C_MOUSE (Histone H2A type 2-C OS=Mus musculus GN=Hist2h2ac PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = -3 
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VY+A++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A2C_HUMAN (Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC PE=1 SV=4)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = -3 
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VY+A++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A2C_BOVIN (Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = -3 
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VY+A++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A2A_RAT (Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2h2aa3 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = -3 
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VY+A++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A2A_MOUSE (Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = -3 
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VY+A++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A2A_HUMAN (Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = -3 
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 624
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VY+A++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.142e-28
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = -3 
Query:  274 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 624
            K   K + +  +RSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    6 KTGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CV884885 vs. ExPASy Swiss-Prot
Match: H2A_ASTRU (Histone H2A OS=Asterias rubens PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.142e-28
Identity = 69/113 (61.06%), Postives = 85/113 (75.22%), Query Frame = -3 
Query:  277 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 612
            K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA+++EYL AE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    9 KARAKAKSRSSRAGLQFPVGRVHRFLRKGNYAE-RVGAGAPVYLAAVMEYLAAEILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
The following BLAST results are available for this feature:
BLAST of CV884885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2A2B_MOUSE1.256e-2859.32Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]
H2A_SIPNU1.640e-2862.28Histone H2A OS=Sipunculus nudus PE=1 SV=2[more]
H2A2C_MOUSE1.640e-2860.17Histone H2A type 2-C OS=Mus musculus GN=Hist2h2ac ... [more]
H2A2C_HUMAN1.640e-2860.17Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC ... [more]
H2A2C_BOVIN1.640e-2860.17Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE... [more]
H2A2A_RAT1.640e-2860.17Histone H2A type 2-A OS=Rattus norvegicus GN=Hist2... [more]
H2A2A_MOUSE1.640e-2860.17Histone H2A type 2-A OS=Mus musculus GN=Hist2h2aa1... [more]
H2A2A_HUMAN1.640e-2860.17Histone H2A type 2-A OS=Homo sapiens GN=HIST2H2AA3... [more]
H2A_ONCMY2.142e-2859.32Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2A_ASTRU2.142e-2861.06Histone H2A OS=Asterias rubens PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884885 ID=CV884885; Name=CV884885; organism=Citrus sinensis; type=EST; length=731bp
CAAGCAGGAGAGAAATGAATTGGAAACAGTGACAGAAAGAAAAAGAAACA
AGACAAAATAGTACATAACGAACAACATTCCTACTCCAAACATGAGTATA
TTAGATCCAGAGGACAAACCTAAGAGTCAAGCCATATGTACTAACCAAGA
TATTCTAGACAACCTACTAAAAAACACAAAATGAGTCCAAGATTACCCTA
ACTGGAAAACAGTAACACATAAAACCAAAGTCATCACTAGAGAGCGATTC
AAAACCACGCAAAGAACTCAATCTTTGGTAGTTTTGTTGATAAGTGATTT
GTGAATGTGAGGGATCACACCACCTCCAGCAATGGTCCCCTTGATGAGAG
TGTCCAGCTCTTCATCTCCTCTAATAGCAAGCTGCAGATGCCTTGGCGTA
ATTCTCTTCACCTTCAGATCCTTGCTTGCATTCCCAGCCAGCTCAAGAAC
CTCAGCAGTCAGGTATTCAAGGATTGAAGCCAAATAAACAGCAGCAGTGG
CCCCAACACGTCCATGGGCAGCAATCCTTGACTTGAGGTGGCGGTGAATG
CGACCCACAGGAAACTGGATACCGGCACGAGATGACCTGGAAATTGGCCT
TTTCTTATCCTTGTCCTTATCCTTGTTACCAGCCGTGGTTTTCGCTGCTA
AAAGACCCTTCCCTCCTTTTCCCGCCATGTCTCACCTGAAAATCTTGGAA
GCCGAAGAGAAAAGAAGAGAGAGATTTTCCT
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