CV884884

Overview
NameCV884884
Unique NameCV884884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 71/115 (61.74%), Postives = 86/115 (74.78%), Query Frame = 3 
Query:  105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 446
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K
Sbjct:    6 KTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 119
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 70/117 (59.83%), Postives = 87/117 (74.36%), Query Frame = 3 
Query:  105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 452
            K   K + +  +RSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    6 KTGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 69/117 (58.97%), Postives = 86/117 (73.50%), Query Frame = 3 
Query:  105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 452
            K   K + +  SRS+RAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYL AE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    6 KGAGKARAKAKSRSARAGLQFPVGRVHRFLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AJ_RAT (Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 3 
Query:  105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 455
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AJ_MOUSE (Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 3 
Query:  105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 455
            K   K + +  SRSSRAG+QFPVGR+HR L+    A  RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I   L+ K T+
Sbjct:    6 KQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSJ (Probable histone H2A.7 OS=Oryza sativa subsp. japonica GN=Os12g0438000 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = 3 
Query:  126 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 446
            K+  SRSS+AG+QFPVGRI R LK+   A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+ G TIA GGV+P+IH+ L+ K
Sbjct:   14 KKATSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPK 120
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSI (Probable histone H2A.7 OS=Oryza sativa subsp. indica GN=OsI_036922 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = 3 
Query:  126 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 446
            K+  SRSS+AG+QFPVGRI R LK+   A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+ G TIA GGV+P+IH+ L+ K
Sbjct:   14 KKATSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPK 120
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A4_WHEAT (Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = 3 
Query:  126 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 446
            K+  SRSS+AG+QFPVGRI R LK+   A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+ G TIA GGV+P+IH+ L+ K
Sbjct:   14 KKATSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPK 120
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 72/117 (61.54%), Postives = 86/117 (73.50%), Query Frame = 3 
Query:  105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 452
            K K K  K   +RSSRAG+QFPVGR+HR LK       RVGA A VYLA++LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K T
Sbjct:    6 KGKAKGTKSK-TRSSRAGLQFPVGRVHRFLKKGNYG-SRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSJ (Probable histone H2A.1 OS=Oryza sativa subsp. japonica GN=Os07g0545300 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = 3 
Query:  126 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 446
            K+  SRSS+AG+QFPVGRI R LK+   A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+ G TIA GGV+P+IH+ L+ K
Sbjct:   14 KKATSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPK 120
The following BLAST results are available for this feature:
BLAST of CV884884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2AX_MOUSE2.863e-2861.74Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2[more]
H2AX_DANRE2.863e-2859.83Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]
H2AL_STRPU2.863e-2858.97Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]
H2AJ_RAT2.863e-2860.17Histone H2A.J OS=Rattus norvegicus GN=H2afj PE=2 S... [more]
H2AJ_MOUSE2.863e-2860.17Histone H2A.J OS=Mus musculus GN=H2afj PE=2 SV=1[more]
H2A7_ORYSJ2.863e-2863.89Probable histone H2A.7 OS=Oryza sativa subsp. japo... [more]
H2A7_ORYSI2.863e-2863.89Probable histone H2A.7 OS=Oryza sativa subsp. indi... [more]
H2A4_WHEAT2.863e-2863.89Histone H2A.4 OS=Triticum aestivum GN=TH254 PE=2 S... [more]
H2A1_PSAMI2.863e-2861.54Late histone H2A.1 OS=Psammechinus miliaris PE=2 S... [more]
H2A1_ORYSJ2.863e-2863.89Probable histone H2A.1 OS=Oryza sativa subsp. japo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884884 ID=CV884884; Name=CV884884; organism=Citrus sinensis; type=EST; length=740bp
AAAATCTCTCTCTTCTTTTCTCTTCGGCTTCCAAGATTTTCAGGTGAGAC
ATGGCGGGAAAAGGAGGGAAGGGTCTTTTAGCAGCGAAAACCACGGCTGG
TAACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTC
GTGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCA
AGGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGC
TTCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATG
CAAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTT
GCTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGC
TGGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTA
CCAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACT
TTGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTT
TGTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTT
GACTCTTAGGTTTGTCCTCTGGATCTAATATACTCATGTTTGGAGTAGGA
ATGTTGTTCGTTATGTACTATTTTGTCTTGTTTCTTTTTCTTTCTGTCAC
TGTTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCTGAAA
back to top