CV884884

Overview
NameCV884884
Unique NameCV884884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28
Identity = 69/108 (63.89%), Postives = 84/108 (77.78%), Query Frame = 3 
Query:  126 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 446
            K+  SRSS+AG+QFPVGRI R LK+   A  RVGA A VYLA++LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+ G TIA GGV+P+IH+ L+ K
Sbjct:   14 KKATSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPK 120
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_TIGCA (Histone H2A OS=Tigriopus californicus GN=His2A PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.739e-28
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 3 
Query:  117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455
            K K +  SRS+RAG+QFPVGRIHR L+    A  RVGA A VYLA+++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_RHYAM (Histone H2A OS=Rhynchosciara americana GN=His2A PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.739e-28
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 3 
Query:  117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455
            K K +  SRS+RAG+QFPVGRIHR L+    A  RVGA A VYLA+++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_DROYA (Histone H2A OS=Drosophila yakuba GN=His2A PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.739e-28
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 3 
Query:  117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455
            K K +  SRS+RAG+QFPVGRIHR L+    A  RVGA A VYLA+++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_DROSI (Histone H2A OS=Drosophila simulans GN=His2A PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.739e-28
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 3 
Query:  117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455
            K K +  SRS+RAG+QFPVGRIHR L+    A  RVGA A VYLA+++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_DROME (Histone H2A OS=Drosophila melanogaster GN=His2A PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.739e-28
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 3 
Query:  117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455
            K K +  SRS+RAG+QFPVGRIHR L+    A  RVGA A VYLA+++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_DROHY (Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.739e-28
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 3 
Query:  117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455
            K K +  SRS+RAG+QFPVGRIHR L+    A  RVGA A VYLA+++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_DROER (Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.739e-28
Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 3 
Query:  117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455
            K K +  SRS+RAG+QFPVGRIHR L+    A  RVGA A VYLA+++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_CHITH (Histone H2A OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.739e-28
Identity = 71/114 (62.28%), Postives = 85/114 (74.56%), Query Frame = 3 
Query:  117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455
            K K +  SRSSRAG+QFPVGRIHR L+       RVGA A VYLA+++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K T+
Sbjct:    9 KVKAKAKSRSSRAGLQFPVGRIHRLLRKGNYGE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121
[Close]
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.739e-28
Identity = 69/115 (60.00%), Postives = 88/115 (76.52%), Query Frame = 3 
Query:  105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 446
            + K K  K  +SRSS+AG+QFPVGRI R+LK+   A  RVGA A VYL+++LEYL AEVLELAGNA++D K  RI PRH+QLA+R DEEL  L+   TIA GGV+P+IH++L+ K
Sbjct:   10 RGKSKGSKS-VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPK 122
The following BLAST results are available for this feature:
BLAST of CV884884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2A1_ORYSI2.863e-2863.89Probable histone H2A.1 OS=Oryza sativa subsp. indi... [more]
H2A_TIGCA3.739e-2862.28Histone H2A OS=Tigriopus californicus GN=His2A PE=... [more]
H2A_RHYAM3.739e-2862.28Histone H2A OS=Rhynchosciara americana GN=His2A PE... [more]
H2A_DROYA3.739e-2862.28Histone H2A OS=Drosophila yakuba GN=His2A PE=2 SV=... [more]
H2A_DROSI3.739e-2862.28Histone H2A OS=Drosophila simulans GN=His2A PE=3 S... [more]
H2A_DROME3.739e-2862.28Histone H2A OS=Drosophila melanogaster GN=His2A PE... [more]
H2A_DROHY3.739e-2862.28Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2[more]
H2A_DROER3.739e-2862.28Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=... [more]
H2A_CHITH3.739e-2862.28Histone H2A OS=Chironomus thummi thummi PE=3 SV=2[more]
H2AXB_ORYSJ3.739e-2860.00Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884884 ID=CV884884; Name=CV884884; organism=Citrus sinensis; type=EST; length=740bp
AAAATCTCTCTCTTCTTTTCTCTTCGGCTTCCAAGATTTTCAGGTGAGAC
ATGGCGGGAAAAGGAGGGAAGGGTCTTTTAGCAGCGAAAACCACGGCTGG
TAACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTC
GTGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCA
AGGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGC
TTCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATG
CAAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTT
GCTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGC
TGGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTA
CCAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACT
TTGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTT
TGTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTT
GACTCTTAGGTTTGTCCTCTGGATCTAATATACTCATGTTTGGAGTAGGA
ATGTTGTTCGTTATGTACTATTTTGTCTTGTTTCTTTTTCTTTCTGTCAC
TGTTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCTGAAA
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