CV884884

Overview
NameCV884884
Unique NameCV884884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.242e-14
Identity = 49/127 (38.58%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  102 NKDKDKDKKRPI--------SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455
            N +K  +K++ +        SRS+RA + FPV RI + ++       R  + A V+LA++LEYLT E+LEL+   +      RITP+H+ L+I  D EL+ L+K  TIA GGV   IH  L++   K
Sbjct:  112 NNEKSNEKQKSVKFANKINESRSARADLTFPVSRIEKMIREGRFTK-RCSSDAPVFLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKK 237          
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AV2_DICDI (Histone H2A.v2 OS=Dictyostelium discoideum GN=H2Av2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.756e-12
Identity = 51/123 (41.46%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  102 NKDKDKDKKRPI--SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGN-ASKDLKVKRITPRHLQLAIRGDEELDTLIKGT-IAGGGVIPHIHKSLINKTTKD 458
            N  K    K+ I  SRS+RAG+   V R+ + L+ R  +  RV  T+ V+LA++LEY+  E+LEL+ N  S   K +RI  RH+ L+I  D EL  L+    I  GGV+  IH SL+ K  KD
Sbjct:  165 NSPKGSKFKKTIRSSRSTRAGLTISVSRVEKLLRGRRYSK-RVSPTSCVFLAAVLEYMVLELLELSLNELSLSKKSRRIKNRHINLSILKDVELSALLNDVIICSGGVLSSIHPSLL-KLKKD 285          
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_OLILU (Histone H2A (Fragment) OS=Olisthodiscus luteus PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 37/67 (55.22%), Postives = 47/67 (70.15%), Query Frame = 3
Query:  228 ATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHI 425
            A A VYLA+   YLTAE+L LAGNA++D K  RI PRH+QLA+     L+ L+   TIA GGV+P+I
Sbjct:    1 AGAPVYLAAXXXYLTAEILXLAGNAARDNKKSRIIPRHVQLAVXXXXXLNKLLGNVTIAQGGVLPNI 67          
The following BLAST results are available for this feature:
BLAST of CV884884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2AV1_DICDI5.242e-1438.58Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av... [more]
H2AV2_DICDI3.756e-1241.46Histone H2A.v2 OS=Dictyostelium discoideum GN=H2Av... [more]
H2A_OLILU9.252e-1155.22Histone H2A (Fragment) OS=Olisthodiscus luteus PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884884 ID=CV884884; Name=CV884884; organism=Citrus sinensis; type=EST; length=740bp
AAAATCTCTCTCTTCTTTTCTCTTCGGCTTCCAAGATTTTCAGGTGAGAC
ATGGCGGGAAAAGGAGGGAAGGGTCTTTTAGCAGCGAAAACCACGGCTGG
TAACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTC
GTGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCA
AGGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGC
TTCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATG
CAAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTT
GCTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGC
TGGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTA
CCAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACT
TTGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTT
TGTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTT
GACTCTTAGGTTTGTCCTCTGGATCTAATATACTCATGTTTGGAGTAGGA
ATGTTGTTCGTTATGTACTATTTTGTCTTGTTTCTTTTTCTTTCTGTCAC
TGTTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCTGAAA
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