CV884884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.382e-29 Identity = 70/111 (63.06%), Postives = 86/111 (77.48%), Query Frame = 3 Query: 126 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455 K+ +SRSS+AG+QFPVGRI R+LK A R+GA A VYLA++LEYLTAEVLELAGNA++D K RI PRH+QLAIR DEEL L+ TIA GGV+P+IH L+ K +K Sbjct: 12 KKAVSRSSKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSK 121
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A4_PSAMI (Late histone H2A.2.2 OS=Psammechinus miliaris PE=3 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 3.382e-29 Identity = 70/111 (63.06%), Postives = 86/111 (77.48%), Query Frame = 3 Query: 117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 446 K K + SRSSRAG+QFPVGR+HR L+ A+ RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I L+ K Sbjct: 9 KSKSKAKSRSSRAGLQFPVGRVHRFLRKGNYAN-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 118
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3) HSP 1 Score: 128.257 bits (321), Expect = 4.417e-29 Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = 3 Query: 117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455 K K + SRSSRAG+QFPVGRIHR L+ A RVGA A VYLA++LEYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K T+ Sbjct: 9 KAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3) HSP 1 Score: 128.257 bits (321), Expect = 4.417e-29 Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = 3 Query: 117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455 K K + SRSSRAG+QFPVGRIHR L+ A RVGA A VYLA++LEYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K T+ Sbjct: 9 KAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3) HSP 1 Score: 128.257 bits (321), Expect = 4.417e-29 Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = 3 Query: 117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455 K K + SRSSRAG+QFPVGRIHR L+ A RVGA A VYLA++LEYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K T+ Sbjct: 9 KAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3) HSP 1 Score: 128.257 bits (321), Expect = 4.417e-29 Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = 3 Query: 117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455 K K + SRSSRAG+QFPVGRIHR L+ A RVGA A VYLA++LEYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K T+ Sbjct: 9 KAKAKAKSRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3) HSP 1 Score: 127.872 bits (320), Expect = 5.768e-29 Identity = 70/115 (60.87%), Postives = 87/115 (75.65%), Query Frame = 3 Query: 105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 446 K K + + +RSSRAG+QFPVGR+HR L+ AH RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I L+ K Sbjct: 6 KAVSKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAH-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPK 119
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 7.534e-29 Identity = 69/111 (62.16%), Postives = 86/111 (77.48%), Query Frame = 3 Query: 126 KRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455 K+ +SRS++AG+QFPVGRI R+LK A R+GA A VYLA++LEYLTAEVLELAGNA++D K RI PRH+QLAIR DEEL L+ TIA GGV+P+IH L+ K +K Sbjct: 12 KKAVSRSAKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSK 121
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3) HSP 1 Score: 127.487 bits (319), Expect = 7.534e-29 Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 3 Query: 105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455 K K + + SRSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2) HSP 1 Score: 127.102 bits (318), Expect = 9.839e-29 Identity = 72/117 (61.54%), Postives = 87/117 (74.36%), Query Frame = 3 Query: 105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 452 K K + + SRSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K T Sbjct: 6 KTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121 The following BLAST results are available for this feature:
BLAST of CV884884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 243
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884884 ID=CV884884; Name=CV884884; organism=Citrus sinensis; type=EST; length=740bpback to top |