CV884884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AJ_CHICK (Histone H2A.J OS=Gallus gallus GN=H2A-IX PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.192e-28 Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 3 Query: 105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 455 K K + + SRSSRAG+QFPVGR+HR L+ A RVGA A VY+A++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A2_LODEL (Histone H2A.2 OS=Lodderomyces elongisporus GN=HTA2 PE=3 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.192e-28 Identity = 66/104 (63.46%), Postives = 86/104 (82.69%), Query Frame = 3 Query: 138 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINK 446 SRSS+AG+ FPVGR+HR L++ A R+G++A VYLAS+LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+IH++L+ K Sbjct: 20 SRSSKAGLTFPVGRVHRFLRNGNYAQ-RIGSSAPVYLASVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGQVTIAQGGVMPYIHQNLLPK 122
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A1_HUMAN (Histone H2A type 1 OS=Homo sapiens GN=HIST1H2AG PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 2.192e-28 Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 3 Query: 105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 455 K K + + +RSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A1_BOVIN (Histone H2A type 1 OS=Bos taurus PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 2.192e-28 Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 3 Query: 105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 455 K K + + +RSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A1J_HUMAN (Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ PE=1 SV=3) HSP 1 Score: 125.946 bits (315), Expect = 2.192e-28 Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 3 Query: 105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 455 K K + + +RSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A1H_HUMAN (Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH PE=1 SV=3) HSP 1 Score: 125.946 bits (315), Expect = 2.192e-28 Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 3 Query: 105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 455 K K + + +RSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A1C_RAT (Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 2.192e-28 Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 3 Query: 105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 455 K K + + SRSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A1C_HUMAN (Histone H2A type 1-C OS=Homo sapiens GN=HIST1H2AC PE=1 SV=3) HSP 1 Score: 125.946 bits (315), Expect = 2.192e-28 Identity = 71/118 (60.17%), Postives = 88/118 (74.58%), Query Frame = 3 Query: 105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKTTK 455 K K + + SRSSRAG+QFPVGR+HR L+ A RVGA A VYLA++LEYLTAE+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ K T+ Sbjct: 6 KQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 122
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_SEPOF (Histone H2A OS=Sepia officinalis PE=1 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28 Identity = 71/114 (62.28%), Postives = 86/114 (75.44%), Query Frame = 3 Query: 117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 455 K K + +RSSRAG+QFPVGRIHR L+ A RVGA A VYLA+++EYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ K T+ Sbjct: 9 KVKGKSKTRSSRAGLQFPVGRIHRLLRKGNYAQ-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQ 121
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2) HSP 1 Score: 125.561 bits (314), Expect = 2.863e-28 Identity = 73/115 (63.48%), Postives = 87/115 (75.65%), Query Frame = 3 Query: 117 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLI-NKTTK 455 K K + +RSSRAG+QFPVGRIHR L+ A RVGA A VYLA+++EYL AEVLELAGNA++D K RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I L+ KTTK Sbjct: 9 KAKGKSKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTTK 122 The following BLAST results are available for this feature:
BLAST of CV884884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 243
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884884 ID=CV884884; Name=CV884884; organism=Citrus sinensis; type=EST; length=740bpback to top |