CV884881

Overview
NameCV884881
Unique NameCV884881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884881 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.087e-12
Identity = 59/184 (32.07%), Postives = 92/184 (50.00%), Query Frame = -3
Query:  226 QLFHKNGAKVVIADVQDNLGQALADKLGNQDVCY-IHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTGTTACAEIEGFCNIPANYYGVSKFGILGLVKGLAAELGRYGIRVDCVSHTYGL---AMTEAI 765
            Q F   GA+VV+ DV     +  A +LG  DV   + CDV+   +V  L+ T V +FG LD++VN   N       ++    +   + ++AV+  G +   + AA +M  R+RG I+    +  +    + G  N     Y  +K GI+G+ K  A EL   GIRV+ ++   GL   AMTEA+
Sbjct:   25 QRFVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVN---NAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIV--NMSSVSGKVGMVGQTN-----YSAAKAGIVGMTKAAAKELAHLGIRVNAIAP--GLIRSAMTEAM 196          
BLAST of CV884881 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350/MT1393 OS=Mycobacterium tuberculosis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.087e-12
Identity = 59/184 (32.07%), Postives = 92/184 (50.00%), Query Frame = -3
Query:  226 QLFHKNGAKVVIADVQDNLGQALADKLGNQDVCY-IHCDVSNEREVINLVDTTVAKFGKLDILVNTGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPRRRGCILYTTGTGTTACAEIEGFCNIPANYYGVSKFGILGLVKGLAAELGRYGIRVDCVSHTYGL---AMTEAI 765
            Q F   GA+VV+ DV     +  A +LG  DV   + CDV+   +V  L+ T V +FG LD++VN   N       ++    +   + ++AV+  G +   + AA +M  R+RG I+    +  +    + G  N     Y  +K GI+G+ K  A EL   GIRV+ ++   GL   AMTEA+
Sbjct:   25 QRFVAEGARVVLGDVNLEATEVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVN---NAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIV--NMSSVSGKVGMVGQTN-----YSAAKAGIVGMTKAAAKELAHLGIRVNAIAP--GLIRSAMTEAM 196          
BLAST of CV884881 vs. ExPASy Swiss-Prot
Match: HCD2_DROME (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophila melanogaster GN=scu PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.965e-11
Identity = 55/198 (27.78%), Postives = 99/198 (50.00%), Query Frame = -3
Query:  187 KNGAKVVIADVQDNLGQALADKLGNQDVCYIHCDVSNEREVINLVDTTVAKFGKLDILVN---TGCNLEYRGFVSILDTPKSDLEHLLAVNTIGGFLVAKHAARVMVPR------RRGCILYTTGTGTTACAEIEGFCNIPANYYGVSKFGILGLVKGLAAELGRYGIRVDCVSHTYGLAMTEAIASIANAALYNMAK 753
            K GA V++AD+  + G  +A +LG++ V ++  DV++E++V   + T   KFG+LD+ VN   T   ++   F   +     D + ++ +NT+G F V + +A +M         +RG I+      T + A  +G   I    Y  SK  ++G+   +A +L   GIR+  ++   GL  T  +A++       +AK
Sbjct:   26 KQGASVILADLPSSKGNEVAKELGDK-VVFVPVDVTSEKDVSAALQTAKDKFGRLDLTVNCAGTATAVKTFNFNKNVAHRLEDFQRVININTVGTFNVIRLSAGLMGANEPNQDGQRGVIV-----NTASVAAFDG--QIGQAAYSASKAAVVGMTLPIARDLSTQGIRICTIAP--GLFNTPMLAALPEKVRTFLAK 213          
The following BLAST results are available for this feature:
BLAST of CV884881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
Y1385_MYCBO1.087e-1232.07Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]
Y1350_MYCTU1.087e-1232.07Uncharacterized oxidoreductase Rv1350/MT1393 OS=My... [more]
HCD2_DROME5.965e-1127.783-hydroxyacyl-CoA dehydrogenase type-2 OS=Drosophi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884881 ID=CV884881; Name=CV884881; organism=Citrus sinensis; type=EST; length=929bp
TTTTTCAAATTATATCATTCAATTCTCACATAATTTTGAATTGACATATG
AGAAAAATGAAGCTAAAAAACTCAGAAATTTTTTTCATCGATTGAAAGCT
CTCTTAGAGGGTAGGATTCACAACTCTCATCTGAATCCTCCATTGACAAG
AAGATTTTGCTTACCCACATAACTTGTATCATCATCTTTAGCCATATTGT
AAAGCGCAGCGTTTGCTATTGATGCTATCGCTTCAGTCATTGCCAAGCCA
TAAGTATGCGATACGCAATCTACTCTTATTCCATACCGTCCAAGCTCTGC
CGCTAAGCCCTTGACAAGTCCCAAGATACCAAATTTTGACACTCCATAAT
AATTAGCTGGAATATTGCAGAAACCTTCAATTTCCGCACAAGCAGTAGTG
CCCGTACCCGTTGTATACAATATGCAACCTCTGCGGCGTGGCACCATGAC
TCTTGCAGCATGCTTGGCTACTAAGAAACCACCAATTGTGTTCACAGCCA
GTAAATGTTCTAGATCAGACTTTGGGGTGTCCAAAATGCTCACGAAACCA
CGATACTCAAGATTGCATCCGGTATTGACCAGGATGTCGAGCTTTCCGAA
TTTAGCAACGGTGGTATCAACAAGATTGATGACTTCCCTTTCATTTGATA
CATCACAATGGATGTAGCAGACATCCTGGTTGCCTAGCTTATCGGCTAGG
GCTTGGCCAAGATTATCTTGCACATCGGCTATGACAACTTTGGCTCCATT
TTTGTGGAAAAGCTGAGCCGCAGATGCTCCGATCCCGCTTGCTCCGCCAG
TAATGATTGCCACTCTGCCTTGTAACCGAATGCTGAGTTGACACCTTTCG
CAGGGTGCTGCTGCAGTAGTACTACAAGCCTGTGTGAAAAAATTTCCTCA
AAAACCTGAAACTCAATCAAGATTGTTAA
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