CV884876

Overview
NameCV884876
Unique NameCV884876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: PPSB_BACSU (Plipastatin synthase subunit B OS=Bacillus subtilis GN=ppsB PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 51/169 (30.18%), Postives = 74/169 (43.79%), Query Frame = 3
Query:  249 GCGARIGIVAKPSFEFVAGVLGTWFSGCIAVPLALSYPESELLHVMHDSDISMVLSTEDYREVLQNVASKSGAKFSLIPPVPNVSSETTVFDQSQAEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            G G  + ++   S E  A +LG W +G   +PL   +P   L  ++ DS  + +L  ED                SLIPP    ++ T    +S   +       D A ++YTSGTTG+PKGV+  H  I   +Q   E +  T  D  LH L  +   G   +L  PL
Sbjct:  517 GSGDIVAVMMGRSMEMPAALLGIWKAGGAYMPLDPHFPAERLSFLLKDSQAAQLLIEEDL--------------ISLIPPSYEGNTITIEHTESYQTEAPNMPPGDLAYLIYTSGTTGRPKGVLVDHHGIANTLQWRREEYSMTEQDISLH-LFSYVFDGCVTSLFTPL 670          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SALTY (Bifunctional protein aas OS=Salmonella typhimurium GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SALTI (Bifunctional protein aas OS=Salmonella typhi GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SALSV (Bifunctional protein aas OS=Salmonella schwarzengrund (strain CVM19633) GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SALPK (Bifunctional protein aas OS=Salmonella paratyphi A (strain AKU_12601) GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SALPC (Bifunctional protein aas OS=Salmonella paratyphi C (strain RKS4594) GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDEAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SALPB (Bifunctional protein aas OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SALPA (Bifunctional protein aas OS=Salmonella paratyphi A GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SALNS (Bifunctional protein aas OS=Salmonella newport (strain SL254) GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SALHS (Bifunctional protein aas OS=Salmonella heidelberg (strain SL476) GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPL 429          
The following BLAST results are available for this feature:
BLAST of CV884876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
PPSB_BACSU2.005e-1130.18Plipastatin synthase subunit B OS=Bacillus subtili... [more]
AAS_SALTY2.005e-1148.53Bifunctional protein aas OS=Salmonella typhimurium... [more]
AAS_SALTI2.005e-1148.53Bifunctional protein aas OS=Salmonella typhi GN=aa... [more]
AAS_SALSV2.005e-1148.53Bifunctional protein aas OS=Salmonella schwarzengr... [more]
AAS_SALPK2.005e-1148.53Bifunctional protein aas OS=Salmonella paratyphi A... [more]
AAS_SALPC2.005e-1148.53Bifunctional protein aas OS=Salmonella paratyphi C... [more]
AAS_SALPB2.005e-1148.53Bifunctional protein aas OS=Salmonella paratyphi B... [more]
AAS_SALPA2.005e-1148.53Bifunctional protein aas OS=Salmonella paratyphi A... [more]
AAS_SALNS2.005e-1148.53Bifunctional protein aas OS=Salmonella newport (st... [more]
AAS_SALHS2.005e-1148.53Bifunctional protein aas OS=Salmonella heidelberg ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884876 ID=CV884876; Name=CV884876; organism=Citrus sinensis; type=EST; length=771bp
GGTTTCGGCTACCACAAGCTCGCTTTCGCTCCTCTTTTCATTCTAATTCA
TTTATGGAGGTCTTCAAAGCTGCATACAAAAAGGGTTCTATGGCTCGTGA
CAGTGTTGCAATTAGAGCAGATCAAAAGAGTTACAGTTATGATCAACTTG
CGTCATCTGCATTAAGAATATCTAGTCTCTTGTGCAGTAATGACCTTAAA
ACTACTAGTGAAAAGACCAAAAATGAGAATTCAGCTGTGCTAGCTGGAGG
ATGTGGAGCACGAATAGGAATTGTGGCGAAGCCTTCATTTGAGTTTGTTG
CAGGAGTACTTGGGACTTGGTTCAGCGGATGTATTGCAGTTCCACTTGCA
CTCAGCTACCCTGAGTCTGAGCTCCTGCATGTGATGCATGATTCAGATAT
ATCCATGGTTCTAAGCACTGAAGATTATCGTGAGGTCTTGCAAAACGTTG
CTTCTAAGAGTGGTGCTAAATTTTCCCTAATTCCCCCTGTTCCCAACGTA
TCTTCAGAGACAACAGTGTTTGATCAGTCCCAGGCTGAAAAAATGGACGG
ACAACGAGGTGAGGATCCAGCGTTAATAGTGTACACGAGTGGGACAACTG
GGAAGCCTAAAGGAGTTGTCCACACACACAAAAGCATTGATGCACAGGTT
CAAATGTTAACTGAGGCTTGGGAATATACATCAGCTGATCAATTTTTGCA
TTCTTTACCACTACATCATGTCCATGGACTTTTCAATGCCTTACTTGCCC
CGCTATAATGCTGGTGCCACA
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