CV884876

Overview
NameCV884876
Unique NameCV884876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884876_ssr621 microsatellite CV884876_ssr621:621..630. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SALG2 (Bifunctional protein aas OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SALEP (Bifunctional protein aas OS=Salmonella enteritidis PT4 (strain P125109) GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SALDC (Bifunctional protein aas OS=Salmonella dublin (strain CT_02021853) GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SALCH (Bifunctional protein aas OS=Salmonella choleraesuis GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDEAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SALA4 (Bifunctional protein aas OS=Salmonella agona (strain SL483) GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEDAAIILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_KLEP7 (Bifunctional protein aas OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=aas PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.005e-11
Identity = 32/68 (47.06%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ ED A+I++TSG+ G PKGVVH+HKS+ + V+ +    ++T+ D+F+ +LPL H  GL   LL PL
Sbjct:  362 QQPEDAAMILFTSGSEGNPKGVVHSHKSLLSNVEQIKTIADFTANDRFMSALPLFHSFGLTVGLLTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ERWCT (Bifunctional protein aas OS=Erwinia carotovora subsp. atroseptica GN=aas PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.619e-11
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  534 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            A  M  Q+ +D A++++TSG+ G PKGVVH+H S+ A V+ +    ++T  D+F+ +LPL H  GL   LL PL
Sbjct:  356 ARAMLPQKPDDAAIVLFTSGSEGNPKGVVHSHDSLLANVEQIRTVADFTPGDRFMSALPLFHAFGLTVGLLTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_YERPY (Bifunctional protein aas OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ +D ALI++TSG+ G PKGVVH+H S+ A V+ +    ++T  D+F+ SLPL H  GL   L  PL
Sbjct:  362 QQADDSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIADFTPRDRFMSSLPLFHAFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_YERPS (Bifunctional protein aas OS=Yersinia pseudotuberculosis GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ +D ALI++TSG+ G PKGVVH+H S+ A V+ +    ++T  D+F+ SLPL H  GL   L  PL
Sbjct:  362 QQADDSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIADFTPRDRFMSSLPLFHAFGLTVGLFTPL 429          
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_YERPP (Bifunctional protein aas OS=Yersinia pestis (strain Pestoides F) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ +D ALI++TSG+ G PKGVVH+H S+ A V+ +    ++T  D+F+ SLPL H  GL   L  PL
Sbjct:  362 QQADDSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIADFTPRDRFMSSLPLFHAFGLTVGLFTPL 429          
The following BLAST results are available for this feature:
BLAST of CV884876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
AAS_SALG22.005e-1148.53Bifunctional protein aas OS=Salmonella gallinarum ... [more]
AAS_SALEP2.005e-1148.53Bifunctional protein aas OS=Salmonella enteritidis... [more]
AAS_SALDC2.005e-1148.53Bifunctional protein aas OS=Salmonella dublin (str... [more]
AAS_SALCH2.005e-1148.53Bifunctional protein aas OS=Salmonella choleraesui... [more]
AAS_SALA42.005e-1148.53Bifunctional protein aas OS=Salmonella agona (stra... [more]
AAS_KLEP72.005e-1147.06Bifunctional protein aas OS=Klebsiella pneumoniae ... [more]
AAS_ERWCT2.619e-1143.24Bifunctional protein aas OS=Erwinia carotovora sub... [more]
AAS_YERPY3.421e-1147.06Bifunctional protein aas OS=Yersinia pseudotubercu... [more]
AAS_YERPS3.421e-1147.06Bifunctional protein aas OS=Yersinia pseudotubercu... [more]
AAS_YERPP3.421e-1147.06Bifunctional protein aas OS=Yersinia pestis (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884876 ID=CV884876; Name=CV884876; organism=Citrus sinensis; type=EST; length=771bp
GGTTTCGGCTACCACAAGCTCGCTTTCGCTCCTCTTTTCATTCTAATTCA
TTTATGGAGGTCTTCAAAGCTGCATACAAAAAGGGTTCTATGGCTCGTGA
CAGTGTTGCAATTAGAGCAGATCAAAAGAGTTACAGTTATGATCAACTTG
CGTCATCTGCATTAAGAATATCTAGTCTCTTGTGCAGTAATGACCTTAAA
ACTACTAGTGAAAAGACCAAAAATGAGAATTCAGCTGTGCTAGCTGGAGG
ATGTGGAGCACGAATAGGAATTGTGGCGAAGCCTTCATTTGAGTTTGTTG
CAGGAGTACTTGGGACTTGGTTCAGCGGATGTATTGCAGTTCCACTTGCA
CTCAGCTACCCTGAGTCTGAGCTCCTGCATGTGATGCATGATTCAGATAT
ATCCATGGTTCTAAGCACTGAAGATTATCGTGAGGTCTTGCAAAACGTTG
CTTCTAAGAGTGGTGCTAAATTTTCCCTAATTCCCCCTGTTCCCAACGTA
TCTTCAGAGACAACAGTGTTTGATCAGTCCCAGGCTGAAAAAATGGACGG
ACAACGAGGTGAGGATCCAGCGTTAATAGTGTACACGAGTGGGACAACTG
GGAAGCCTAAAGGAGTTGTCCACACACACAAAAGCATTGATGCACAGGTT
CAAATGTTAACTGAGGCTTGGGAATATACATCAGCTGATCAATTTTTGCA
TTCTTTACCACTACATCATGTCCATGGACTTTTCAATGCCTTACTTGCCC
CGCTATAATGCTGGTGCCACA
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