CV884876

Overview
NameCV884876
Unique NameCV884876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_YERPG (Bifunctional protein aas OS=Yersinia pestis bv. Antiqua (strain Angola) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ +D ALI++TSG+ G PKGVVH+H S+ A V+ +    ++T  D+F+ SLPL H  GL   L  PL
Sbjct:  362 QQADDSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIADFTPRDRFMSSLPLFHAFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_YERPB (Bifunctional protein aas OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ +D ALI++TSG+ G PKGVVH+H S+ A V+ +    ++T  D+F+ SLPL H  GL   L  PL
Sbjct:  362 QQADDSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIADFTPRDRFMSSLPLFHAFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_YERP3 (Bifunctional protein aas OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ +D ALI++TSG+ G PKGVVH+H S+ A V+ +    ++T  D+F+ SLPL H  GL   L  PL
Sbjct:  362 QQADDSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIADFTPRDRFMSSLPLFHAFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_YERE8 (Bifunctional protein aas OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ +D ALI++TSG+ G PKGVVH+H S+ A V+ +    ++T  D+F+ SLPL H  GL   L  PL
Sbjct:  362 QQADDSALILFTSGSEGNPKGVVHSHASLLANVEQIRTIADFTPRDRFMSSLPLFHAFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SHISS (Bifunctional protein aas OS=Shigella sonnei (strain Ss046) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SHIFL (Bifunctional protein aas OS=Shigella flexneri GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SHIF8 (Bifunctional protein aas OS=Shigella flexneri serotype 5b (strain 8401) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_SHIB3 (Bifunctional protein aas OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_PECCP (Bifunctional protein aas OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 3 
Query:  534 AEKMDGQRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            A  M  Q+ +D A++++TSG+ G PKGVVH+H S+ A V+ +    ++T  D+F+ +LPL H  GL   LL PL
Sbjct:  356 ARAMLPQKPDDAAIVLFTSGSEGNPKGVVHSHDSLLANVEQIRTVADFTPRDRFMSALPLFHAFGLTVGLLTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ESCF3 (Bifunctional protein aas OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
The following BLAST results are available for this feature:
BLAST of CV884876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
AAS_YERPG3.421e-1147.06Bifunctional protein aas OS=Yersinia pestis bv. An... [more]
AAS_YERPB3.421e-1147.06Bifunctional protein aas OS=Yersinia pseudotubercu... [more]
AAS_YERP33.421e-1147.06Bifunctional protein aas OS=Yersinia pseudotubercu... [more]
AAS_YERE83.421e-1147.06Bifunctional protein aas OS=Yersinia enterocolitic... [more]
AAS_SHISS3.421e-1148.53Bifunctional protein aas OS=Shigella sonnei (strai... [more]
AAS_SHIFL3.421e-1148.53Bifunctional protein aas OS=Shigella flexneri GN=a... [more]
AAS_SHIF83.421e-1148.53Bifunctional protein aas OS=Shigella flexneri sero... [more]
AAS_SHIB33.421e-1148.53Bifunctional protein aas OS=Shigella boydii seroty... [more]
AAS_PECCP3.421e-1143.24Bifunctional protein aas OS=Pectobacterium carotov... [more]
AAS_ESCF33.421e-1148.53Bifunctional protein aas OS=Escherichia fergusonii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884876 ID=CV884876; Name=CV884876; organism=Citrus sinensis; type=EST; length=771bp
GGTTTCGGCTACCACAAGCTCGCTTTCGCTCCTCTTTTCATTCTAATTCA
TTTATGGAGGTCTTCAAAGCTGCATACAAAAAGGGTTCTATGGCTCGTGA
CAGTGTTGCAATTAGAGCAGATCAAAAGAGTTACAGTTATGATCAACTTG
CGTCATCTGCATTAAGAATATCTAGTCTCTTGTGCAGTAATGACCTTAAA
ACTACTAGTGAAAAGACCAAAAATGAGAATTCAGCTGTGCTAGCTGGAGG
ATGTGGAGCACGAATAGGAATTGTGGCGAAGCCTTCATTTGAGTTTGTTG
CAGGAGTACTTGGGACTTGGTTCAGCGGATGTATTGCAGTTCCACTTGCA
CTCAGCTACCCTGAGTCTGAGCTCCTGCATGTGATGCATGATTCAGATAT
ATCCATGGTTCTAAGCACTGAAGATTATCGTGAGGTCTTGCAAAACGTTG
CTTCTAAGAGTGGTGCTAAATTTTCCCTAATTCCCCCTGTTCCCAACGTA
TCTTCAGAGACAACAGTGTTTGATCAGTCCCAGGCTGAAAAAATGGACGG
ACAACGAGGTGAGGATCCAGCGTTAATAGTGTACACGAGTGGGACAACTG
GGAAGCCTAAAGGAGTTGTCCACACACACAAAAGCATTGATGCACAGGTT
CAAATGTTAACTGAGGCTTGGGAATATACATCAGCTGATCAATTTTTGCA
TTCTTTACCACTACATCATGTCCATGGACTTTTCAATGCCTTACTTGCCC
CGCTATAATGCTGGTGCCACA
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