CV884876

Overview
NameCV884876
Unique NameCV884876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ECOUT (Bifunctional protein aas OS=Escherichia coli (strain UTI89 / UPEC) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ECOSM (Bifunctional protein aas OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ECOSE (Bifunctional protein aas OS=Escherichia coli (strain SE11) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ECOLU (Bifunctional protein aas OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ECOLI (Bifunctional protein aas OS=Escherichia coli (strain K12) GN=aas PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ECOLC (Bifunctional protein aas OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ECOL6 (Bifunctional protein aas OS=Escherichia coli O6 GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ECOL5 (Bifunctional protein aas OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ECOK1 (Bifunctional protein aas OS=Escherichia coli O1:K1 / APEC GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
[Close]
BLAST of CV884876 vs. ExPASy Swiss-Prot
Match: AAS_ECOHS (Bifunctional protein aas OS=Escherichia coli O9:H4 (strain HS) GN=aas PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.421e-11
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  552 QRGEDPALIVYTSGTTGKPKGVVHTHKSIDAQVQMLTEAWEYTSADQFLHSLPLHHVHGLFNALLAPL 755
            Q+ E+ ALI++TSG+ G PKGVVH+HKSI A V+ +    ++T+ D+F+ +LPL H  GL   L  PL
Sbjct:  362 QQPEEEALILFTSGSEGHPKGVVHSHKSILANVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPL 429
The following BLAST results are available for this feature:
BLAST of CV884876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
AAS_ECOUT3.421e-1148.53Bifunctional protein aas OS=Escherichia coli (stra... [more]
AAS_ECOSM3.421e-1148.53Bifunctional protein aas OS=Escherichia coli (stra... [more]
AAS_ECOSE3.421e-1148.53Bifunctional protein aas OS=Escherichia coli (stra... [more]
AAS_ECOLU3.421e-1148.53Bifunctional protein aas OS=Escherichia coli O17:K... [more]
AAS_ECOLI3.421e-1148.53Bifunctional protein aas OS=Escherichia coli (stra... [more]
AAS_ECOLC3.421e-1148.53Bifunctional protein aas OS=Escherichia coli (stra... [more]
AAS_ECOL63.421e-1148.53Bifunctional protein aas OS=Escherichia coli O6 GN... [more]
AAS_ECOL53.421e-1148.53Bifunctional protein aas OS=Escherichia coli O6:K1... [more]
AAS_ECOK13.421e-1148.53Bifunctional protein aas OS=Escherichia coli O1:K1... [more]
AAS_ECOHS3.421e-1148.53Bifunctional protein aas OS=Escherichia coli O9:H4... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884876 ID=CV884876; Name=CV884876; organism=Citrus sinensis; type=EST; length=771bp
GGTTTCGGCTACCACAAGCTCGCTTTCGCTCCTCTTTTCATTCTAATTCA
TTTATGGAGGTCTTCAAAGCTGCATACAAAAAGGGTTCTATGGCTCGTGA
CAGTGTTGCAATTAGAGCAGATCAAAAGAGTTACAGTTATGATCAACTTG
CGTCATCTGCATTAAGAATATCTAGTCTCTTGTGCAGTAATGACCTTAAA
ACTACTAGTGAAAAGACCAAAAATGAGAATTCAGCTGTGCTAGCTGGAGG
ATGTGGAGCACGAATAGGAATTGTGGCGAAGCCTTCATTTGAGTTTGTTG
CAGGAGTACTTGGGACTTGGTTCAGCGGATGTATTGCAGTTCCACTTGCA
CTCAGCTACCCTGAGTCTGAGCTCCTGCATGTGATGCATGATTCAGATAT
ATCCATGGTTCTAAGCACTGAAGATTATCGTGAGGTCTTGCAAAACGTTG
CTTCTAAGAGTGGTGCTAAATTTTCCCTAATTCCCCCTGTTCCCAACGTA
TCTTCAGAGACAACAGTGTTTGATCAGTCCCAGGCTGAAAAAATGGACGG
ACAACGAGGTGAGGATCCAGCGTTAATAGTGTACACGAGTGGGACAACTG
GGAAGCCTAAAGGAGTTGTCCACACACACAAAAGCATTGATGCACAGGTT
CAAATGTTAACTGAGGCTTGGGAATATACATCAGCTGATCAATTTTTGCA
TTCTTTACCACTACATCATGTCCATGGACTTTTCAATGCCTTACTTGCCC
CGCTATAATGCTGGTGCCACA
back to top